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BaseInfo

ncRNA ID novel_zma_miR4101
Species Zea mays
Class miRNA
Genome position Chr6:81277884-81277998 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161;SRR2287164
Length 21
Mature sequence(if miRNA) 95 - AUGGAAUAAAAUGGAUGGACU - 115
Stem-loop(if miRNA) --   C                     UC        C         U   A     
  UCU UCCAUUUUAUUCCAUUUUAGU  CUAAAUUA CAAAUAUGG AAC AAAAUA
  ||| |||||||||||||||||||||  |||||||| ||||||||| ||| |||||G
  AGG AGGUAAAAUAAGGUAAAAUUA  GAUUUAAU GUUUAUACC UUG UUUUGA
UC   U                     GA        U         U   A     
Stem-loop sequence UCUCUCCAUUUUAUUCCAUUUUAGUUCCUAAAUUACCAAAUAUGGUAACAAAAAUAGAGUUUUAGUUUCCAUAUUUGUUAAUUUAGAGAUUAAAAUGGAAUAAAAUGGAUGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ052038.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  ||||=||||||||||||||||
targets:201   AGUCUAUCCAUUUUAUUCCAU   221

1.0 TSA: Zea mays contig53158, mRNA sequence NA coding protein psRNATarget
BT083561.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  ||||=||||||||||||||||
targets:204   AGUCUAUCCAUUUUAUUCCAU   224

1.0 Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds NA coding protein psRNATarget
BT019141.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:294   AGUCCCUCCAUUUUAUUCCAU   314

1.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
JB167174.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAU   189

1.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406713.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAU   189

1.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
LQ238843.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAU   189

1.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406419.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAU   98

1.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
JB166880.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAU   98

1.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ238549.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAU   98

1.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
XM_020545045.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  ||||=*|||||||||||||||
targets:2151   AGUCUCUCCAUUUUAUUCCAU   2171

2.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550478.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:2650   AGUCCCUUCAUUUUAUUCCAU   2670

2.0 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:2099   AGUCCCUUCAUUUUAUUCCAU   2119

2.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:2099   AGUCCCUUCAUUUUAUUCCAU   2119

2.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
LQ235182.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAU   49

2.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
HI403052.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAU   49

2.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
JB163513.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|=|||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAU   49

2.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
XM_008647122.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*||||||||||||||*
targets:2989   AGUCCCUCCAUUUUAUUCCAC   3009

2.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*||||||||||||||*
targets:2600   AGUCCCUCCAUUUUAUUCCAC   2620

2.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651702.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*||||||||||||||*
targets:482   AGUCCCUCCAUUUUAUUCCAC   502

2.0 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543560.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  **||||||||||||||||=|*
targets:478   CAUCCAUCCAUUUUAUUCUAA   498

2.5 PREDICTED: Zea mays putative POX domain/homeobox DNA-binding domain family protein (HB21), transcript variant X1, mRNA NA coding protein psRNATarget
BT042226.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  **||||||||||||||||=|*
targets:403   CAUCCAUCCAUUUUAUUCUAA   423

2.5 Zea mays full-length cDNA clone ZM_BFb0169E10 mRNA, complete cds NA coding protein psRNATarget
XM_020542840.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|*|||||||||||||
targets:999   AGUCCCUACAUUUUAUUCCAU   1019

2.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
EU945607.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*||||*||||||||||
targets:143   AGUCCCUCCAAUUUAUUCCAU   163

2.5 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
NM_001305845.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |*||=*|||||||||||||||
targets:2084   AAUCUUUCCAUUUUAUUCCAU   2104

2.0 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  ||||=*|*|||||||||||||
targets:842   AGUCUCUACAUUUUAUUCCAU   862

3.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  ||||=*|*|||||||||||||
targets:842   AGUCUCUACAUUUUAUUCCAU   862

3.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||=|*|*|||||||||||||
targets:579   AGUUCCUACAUUUUAUUCCAU   599

3.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543931.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  =*|||=||||||*||||||||
targets:10771   GAUCCGUCCAUUCUAUUCCAU   10791

2.5 PREDICTED: Zea mays NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (LOC109942203), mRNA NA coding protein psRNATarget
XM_008683103.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  **|||*|||||||||||=|||
targets:2886   UAUCCCUCCAUUUUAUUUCAU   2906

2.5 PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA NA coding protein psRNATarget
BT038140.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  **|||*|||||||||||=|||
targets:887   UAUCCCUCCAUUUUAUUUCAU   907

2.5 Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds NA coding protein psRNATarget
NM_001143572.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  **|||*|||||||||||=|||
targets:887   UAUCCCUCCAUUUUAUUUCAU   907

2.5 Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA NA coding protein psRNATarget
XM_008660555.2
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|*||||||||||||*
targets:1917   AGUCCCUACAUUUUAUUCCAC   1937

3.0 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |||||*|*||||||||||||*
targets:1270   AGUCCUUACAUUUUAUUCCAC   1290

3.0 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
EZ113222.1
ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1
  |**=||||||||||||||||*
targets:96   AAAUCAUCCAUUUUAUUCCAC   116

3.0 TSA: Zea mays contig48883, mRNA sequence NA coding protein psRNATarget
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