Search result

BaseInfo

ncRNA ID	novel_zma_miR4095
Species	Zea mays
Class	miRNA
Genome position	Chr6:43088228-43088319 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2089702
Length	24
Mature sequence(if miRNA)	69 - CCAUAUGGAUUGAGGAGGAUUGAG - 92
Stem-loop(if miRNA)	--            -   A       -------------------- GGGAUUUUAA   CCAUAUGGAUUG AGG GGAUUGA                    G          U   |||||||||||| ||| |||||||                    |   GGUAUACCUAAC UCC CCUAACU                    C          C UA            C   -       AUGCCUAACCUACUCUAAAA UGAAUGAUCC
Stem-loop sequence	CCAUAUGGAUUGAGGAGGAUUGAGGGGAUUUUAAUCCCUAGUAAGUCAAAAUCUCAUCCAAUCCGUAUCAAUCCCCUCCAAUCCAUAUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240954.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||||||||||||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	0.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||||||||||||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	0.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||||||||||||||||||||||| targets:80   CUCAAUCCUCCUCAAUCCAUAUGG   103 Target Full Sequence	0.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*||||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*||||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*||||||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	1.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*||||||||||||||| targets:605   CUCAAUCCCCCUCAAUCCAUAUGG   628 Target Full Sequence	1.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*||||||||||||||| targets:1968   CUCAAUCCCCCUCAAUCCAUAUGG   1991 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||=||||*||||||||||||||| targets:29   CUCGAUCCCCCUCAAUCCAUAUGG   52 Target Full Sequence	1.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|||||||*||||||||||||||| targets:848   UUCAAUCCCCCUCAAUCCAUAUGG   871 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||||||||*=|||||||||||||| targets:1072   CUCAAUCCCUCUCAAUCCAUAUGG   1095 Target Full Sequence	2.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:1420   AUCAAUCCCCUUCAAUCCAUAUGG   1443 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:1464   AUCAAUCCCCUUCAAUCCAUAUGG   1487 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:1482   AUCAAUCCCCUUCAAUCCAUAUGG   1505 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAUGG   1519 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAUGG   1519 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *|||||||*|=||||||||||||| targets:975   AUCAAUCCCCUUCAAUCCAUAUGG   998 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||||||**||||||||||||||| targets:1607   CUCAAUCACCCUCAAUCCAUAUGG   1630 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   |||||||**||||||||||||||| targets:1607   CUCAAUCACCCUCAAUCCAUAUGG   1630 Target Full Sequence	2.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GAGUUAGGA-GGAGUUAGGUAUACC   1   =||==|=||-||||||||||||||| targets:1546   UUCGGUUCUACCUCAAUCCAUAUGG   1570 Target Full Sequence	3.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:367   CUUUGAAUCCCCCUCAAUCCAUAUGG   392 Target Full Sequence	1.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:907   CUUUGAAUCCCCCUCAAUCCAUAUGG   932 Target Full Sequence	1.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:904   CUUUGAAUCCCCCUCAAUCCAUAUGG   929 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:934   CUUUGAAUCCCCCUCAAUCCAUAUGG   959 Target Full Sequence	1.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:934   CUUUGAAUCCCCCUCAAUCCAUAUGG   959 Target Full Sequence	1.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   GAG--UUAGGAGGAGUUAGGUAUACC   1   ||=--|||||*||||||||||||||| targets:1206   CUUUGAAUCCCCCUCAAUCCAUAUGG   1231 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *||=||||*|=||||||||||||| targets:1697   AUCGAUCCCCUUCAAUCCAUAUGG   1720 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   *||||||=*|=||||||||||||| targets:3119   AUCAAUCUCCUUCAAUCCAUAUGG   3142 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
HI407338.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|=|||||*|||||||||*||||| targets:72   UUUAAUCCCCCUCAAUCCCUAUGG   95 Target Full Sequence	2.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|=|||||*|||||||||*||||| targets:72   UUUAAUCCCCCUCAAUCCCUAUGG   95 Target Full Sequence	2.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
JB167799.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|=|||||*|||||||||*||||| targets:72   UUUAAUCCCCCUCAAUCCCUAUGG   95 Target Full Sequence	2.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|=|||||*|||||||||*||||| targets:2602   UUUAAUCCCCCUCAAUCCCUAUGG   2625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   GAG-UUAGGAGGAGUUAGGUAUACC   1   |||-|||||*|||||||||*||||| targets:3925   CUCCAAUCCCCCUCAAUCCCUAUGG   3949 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   GA--GUUAGGAGGAGUUAGGUAUACC   1   ||--||||||*|||||||||*||||| targets:36   CUUCCAAUCCCCCUCAAUCCCUAUGG   61 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|*||*||*||||||||||||||| targets:92   UUAAAACCCCCUCAAUCCAUAUGG   115 Target Full Sequence	2.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
EZ052459.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =*|=|||||*|||||||||||||* targets:26   UCCGAUCCUACUCAAUCCAUAUGA   49 Target Full Sequence	2.0	TSA: Zea mays contig53580, mRNA sequence	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   ||-|||||*=|||||||||||||* targets:464   CU-AAUCCCUCUCAAUCCAUAUGA   486 Target Full Sequence	3.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =|==||||*|||||||||*||||| targets:819   UUUGAUCCCCCUCAAUCCCUAUGG   842 Target Full Sequence	2.5	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =*|||||||*|||||||||*|||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =*|||||||*|||||||||*|||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =*|||||||*|||||||||*|||| targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   GAGUUAGGAGGAGUUAGGUAUACC   1   =*|||||||*|||||||||*|||| targets:880   UCCAAUCCUGCUCAAUCCACAUGG   903 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
BT087370.2	ncRNA:24   GA--GUUAGGAGGAGUUAGGUAUACC   1   ||--||=|||*|||||||||*||||| targets:272   CUUCCAGUCCACCUCAAUCCCUAUGG   297 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0056A06 mRNA, complete cds	NA	coding protein	psRNATarget