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BaseInfo

ncRNA ID	novel_zma_miR4091
Species	Zea mays
Class	miRNA
Genome position	Chr1:45605557-45605675 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - AGGCUAGUUUGGAAACUCCAAUUU - 24
Stem-loop(if miRNA)	--A           A   UC  A        AG     C                 AUA    GGCUAGUUUGG AAC  CA UUUUCCAA  GAUUU UAUUUUCCCAAGGAAAA   A    ||||||||||| |||  || ||||||||  ||||| |||||||||||||||||   A    CCGAUCAAACC UUG  GU AAAGGGUU  CUAAA GUAAAAGGGUUUCUUUU   C CUC           C   GA  A        CU     A                 AAU
Stem-loop sequence	AGGCUAGUUUGGAAACUCCAAUUUUCCAAAGGAUUUCUAUUUUCCCAAGGAAAAAUAAACUAAUUUUCUUUGGGAAAAUGAAAAUCUCUUGGGAAAAUGAGGUUCCCAAACUAGCCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547641.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   =||||*|||||||=|||||||||| targets:3530   GAAUUAGAGUUUCUAAACUAGCCU   3553 Target Full Sequence	2.5	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||=|||||||||||||||* targets:413   AAAAUGGGGUUUCCAAACUAGCCC   436 Target Full Sequence	2.0	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
EZ071161.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||||**||||||||||||||||| targets:117   AAAUUUAAGUUUCCAAACUAGCCU   140 Target Full Sequence	2.0	TSA: Zea mays contig06798, mRNA sequence	NA	coding protein	psRNATarget
XM_008679616.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ==|||*|||||||||||||||||* targets:1219   GGAUUUGAGUUUCCAAACUAGCCC   1242 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103652675 (LOC103652675), mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ==|||*|||||||||||||||||* targets:308   GGAUUUGAGUUUCCAAACUAGCCA   331 Target Full Sequence	2.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ==|||*|||||||||||||||||* targets:87   GGAUUUGAGUUUCCAAACUAGCCC   110 Target Full Sequence	2.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
EU972304.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||=|||*|||||||||||| targets:231   AAAAUGGGGUUCCCAAACUAGCCU   254 Target Full Sequence	2.5	Zea mays clone 379375 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||||||*|||||||||||* targets:2558   AAAAUGGAGUUCCCAAACUAGCCC   2581 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||||||*|||||||||||* targets:454   AAAAUGGAGUUCCCAAACUAGCCC   477 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||||||*||||||||||||* targets:1176   AAAAUGGAGUCUCCAAACUAGCCC   1199 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||||||*||||||||||||* targets:1176   AAAAUGGAGUCUCCAAACUAGCCC   1199 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
XM_008658779.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||||||*|||||||||||* targets:1944   AAAAUGGAGUUCCCAAACUAGCCA   1967 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||||||*||||||||||||* targets:6   AAAAUGGAGUCUCCAAACUAGCCC   29 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
BT088027.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||||||||||||||||*||* targets:692   AAAAUGGAGUUUCCAAACUAACCG   715 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0366P15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ111591.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   =*|||*|||||||||||||||||* targets:103   GCAUUUGAGUUUCCAAACUAGCCA   126 Target Full Sequence	2.0	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
XM_008676159.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |=|||**||||||||||||||||* targets:2663   AGAUUUAAGUUUCCAAACUAGCCC   2686 Target Full Sequence	3.0	PREDICTED: Zea mays VIN3-like protein 1 (LOC103650592), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550313.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |=|||**||||||||||||||||* targets:2343   AGAUUUAAGUUUCCAAACUAGCCC   2366 Target Full Sequence	3.0	PREDICTED: Zea mays VIN3-like protein 1 (LOC103650592), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008652587.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*=|||||||||||||||* targets:1076   AAAAUGAGGUUUCCAAACUAGCCC   1099 Target Full Sequence	3.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034002.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*=|||||||||||||||* targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044B05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137218.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*=|||||||||||||||* targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039 Target Full Sequence	3.0	Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), mRNA	NA	coding protein	psRNATarget
XM_008652589.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*=|||||||||||||||* targets:998   AAAAUGAGGUUUCCAAACUAGCCC   1021 Target Full Sequence	3.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652590.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*=|||||||||||||||* targets:971   AAAAUGAGGUUUCCAAACUAGCCC   994 Target Full Sequence	3.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU968273.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   *=|||*||||||*||||||||||| targets:802   UGAUUUGAGUUUACAAACUAGCCU   825 Target Full Sequence	2.5	Zea mays clone 318071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976682.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   *=|||*||||||*||||||||||| targets:735   UGAUUUGAGUUUACAAACUAGCCU   758 Target Full Sequence	2.5	Zea mays clone 987107 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY104920.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*||*||||*|||||||||||| targets:1506   AAAAUGUAGUUCCCAAACUAGCCU   1529 Target Full Sequence	2.5	Zea mays PCO100740 mRNA sequence	NA	coding protein	psRNATarget
JB167484.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||*|||*|||||||||||| targets:101   AAAAUGGUGUUGCCAAACUAGCCU   124 Target Full Sequence	2.5	Sequence 5148 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239153.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||*|||*|||||||||||| targets:101   AAAAUGGUGUUGCCAAACUAGCCU   124 Target Full Sequence	2.5	Sequence 5148 from Patent EP2985353	NA	coding protein	psRNATarget
HI407023.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   |||*|||*|||*|||||||||||| targets:101   AAAAUGGUGUUGCCAAACUAGCCU   124 Target Full Sequence	2.5	Sequence 5148 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008683270.2	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ||||-||||*|*|||||||||||| targets:1675   AAAU-GGAGGUGCCAAACUAGCCU   1697 Target Full Sequence	2.5	PREDICTED: Zea mays LUC7 related protein (LOC100273852), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964317.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ||||-||||*|*|||||||||||| targets:1625   AAAU-GGAGGUGCCAAACUAGCCU   1647 Target Full Sequence	2.5	Zea mays clone 277919 mRNA sequence	NA	coding protein	psRNATarget
NM_001148249.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ||||-||||*|*|||||||||||| targets:1544   AAAU-GGAGGUGCCAAACUAGCCU   1566 Target Full Sequence	2.5	Zea mays LUC7 related protein (LOC100273852), mRNA	NA	coding protein	psRNATarget
BT041923.1	ncRNA:24   UUUAACCUCAAAGGUUUGAUCGGA   1   ||||-||||*|*|||||||||||| targets:1544   AAAU-GGAGGUGCCAAACUAGCCU   1566 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081A09 mRNA, complete cds	NA	coding protein	psRNATarget