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BaseInfo

ncRNA ID novel_zma_miR4089
Species Zea mays
Class miRNA
Genome position Chr5:164137891-164137942 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR5451004
Length 24
Mature sequence(if miRNA) 1 - ACUCGGCAAAGAACAUAUACCGGU - 24
Stem-loop(if miRNA) --              AUAU   GGU
  ACUCGGCAAAGAAC    ACC   G
  ||||||||||||||    |||
  UGAGCCGUUUCUUG    UGG   C
CG              GUUC   AUC
Stem-loop sequence ACUCGGCAAAGAACAUAUACCGGUGCCUAGGUCUUGGUUCUUUGCCGAGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238815.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58

1.0 Sequence 4810 from Patent EP2985353 NA coding protein psRNATarget
JB167146.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58

1.0 Sequence 4810 from Patent EP2559767 NA coding protein psRNATarget
HI406685.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:35   ACCGGUAUAGGUUCUUUGCCGAGU   58

1.0 Sequence 4810 from Patent EP2074227 NA coding protein psRNATarget
LQ239092.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195

1.0 Sequence 5087 from Patent EP2985353 NA coding protein psRNATarget
HI406962.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195

1.0 Sequence 5087 from Patent EP2074227 NA coding protein psRNATarget
JB167423.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  |||||||||*||||||||||||||
targets:172   ACCGGUAUAGGUUCUUUGCCGAGU   195

1.0 Sequence 5087 from Patent EP2559767 NA coding protein psRNATarget
XM_008676330.2
ncRNA:24   UGGC-CAUAUACAAGAAACGGCUCA   1
  =|||-||=|=|*|||||||||||||
targets:1709   GCCGAGUGUGUAUUCUUUGCCGAGU   1733

3.0 PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA NA coding protein psRNATarget
HI406093.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:70   CUAAGUAAAUGUUCUUUGCCGAGU   93

1.0 Sequence 4218 from Patent EP2074227 NA coding protein psRNATarget
LQ238223.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:70   CUAAGUAAAUGUUCUUUGCCGAGU   93

1.0 Sequence 4218 from Patent EP2985353 NA coding protein psRNATarget
JB166554.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:70   CUAAGUAAAUGUUCUUUGCCGAGU   93

1.0 Sequence 4218 from Patent EP2559767 NA coding protein psRNATarget
BT065228.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:892   CUAAGUAAAUGUUCUUUGCCGAGU   915

1.0 Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds NA coding protein psRNATarget
NM_001175465.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:892   CUAAGUAAAUGUUCUUUGCCGAGU   915

1.0 Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA NA coding protein psRNATarget
EU942429.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:903   CUAAGUAAAUGUUCUUUGCCGAGU   926

1.0 Zea mays clone 1497931 mRNA sequence NA coding protein psRNATarget
XM_008673932.2
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1311   CUAAGUAAAUGUUCUUUGCCGAGU   1334

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008673931.2
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1315   CUAAGUAAAUGUUCUUUGCCGAGU   1338

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020549486.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1390   CUAAGUAAAUGUUCUUUGCCGAGU   1413

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020549487.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1395   CUAAGUAAAUGUUCUUUGCCGAGU   1418

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020549484.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1395   CUAAGUAAAUGUUCUUUGCCGAGU   1418

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008673929.2
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1400   CUAAGUAAAUGUUCUUUGCCGAGU   1423

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020549485.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1441   CUAAGUAAAUGUUCUUUGCCGAGU   1464

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008673925.2
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1524   CUAAGUAAAUGUUCUUUGCCGAGU   1547

1.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA NA coding protein psRNATarget
EU943138.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1786   CUAAGUAAAUGUUCUUUGCCGAGU   1809

1.0 Zea mays clone 1567640 mRNA sequence NA coding protein psRNATarget
BT036012.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1775   CUAAGUAAAUGUUCUUUGCCGAGU   1798

1.0 Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds NA coding protein psRNATarget
NM_001138773.1
ncRNA:24   UGGCCAUAUACAAGAAACGGCUCA   1
  *=**|||*||||||||||||||||
targets:1775   CUAAGUAAAUGUUCUUUGCCGAGU   1798

1.0 Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA NA coding protein psRNATarget
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