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BaseInfo

ncRNA ID novel_zma_miR4088
Species Zea mays
Class miRNA
Genome position Chr5:156561271-156561336 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - AGGGCUUGUUCGGUUAUACCAAUC - 24
Stem-loop(if miRNA) --                 AC      -AG  G
  AGGGCUUGUUCGGUUAU  CAAUCU   AA G
  |||||||||||||||||  ||||||   || G
  UCCCGAACAAGCCAAUG  GUUAGG   UU G
AA                 CA      AAA  A
Stem-loop sequence AGGGCUUGUUCGGUUAUACCAAUCUAGAAGGGGAUUAAAGGAUUGACGUAACCGAACAAGCCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548160.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||||=||||||||||||||||
targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841

1.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||||=||||||||||||||||
targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068

1.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   CUAACC--AUAUUGGCUUGUUCGGGA   1
  ||||||--||||||||||||||||||
targets:1991   GAUUGGGAUAUAACCGAACAAGCCCU   2016

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
HI406796.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||*|=||||||||||||||||
targets:117   GAUUGAUGUAACCGAACAAGCCCU   140

2.0 Sequence 4921 from Patent EP2074227 NA coding protein psRNATarget
LQ238926.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||*|=||||||||||||||||
targets:117   GAUUGAUGUAACCGAACAAGCCCU   140

2.0 Sequence 4921 from Patent EP2985353 NA coding protein psRNATarget
JB167257.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||*|=||||||||||||||||
targets:117   GAUUGAUGUAACCGAACAAGCCCU   140

2.0 Sequence 4921 from Patent EP2559767 NA coding protein psRNATarget
XM_020542894.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||||=||||||||||*|||||
targets:21   GAUUGGUGUAACCGAACAUGCCCU   44

2.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA NA coding protein psRNATarget
EU957179.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*|||=||||||||||||||||
targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607

1.0 Zea mays clone 1584995 mRNA sequence NA coding protein psRNATarget
BT064472.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  ||||||*|-||||||||||||||||
targets:1443   GAUUGGAAAUAACCGAACAAGCCCU   1467

3.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  ||||||*|-||||||||||||||||
targets:1487   GAUUGGAAAUAACCGAACAAGCCCU   1511

3.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  ||||||*|-||||||||||||||||
targets:1505   GAUUGGAAAUAACCGAACAAGCCCU   1529

3.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  ||||||*|-||||||||||||||||
targets:1519   GAUUGGAAAUAACCGAACAAGCCCU   1543

3.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  ||||||*|-||||||||||||||||
targets:1519   GAUUGGAAAUAACCGAACAAGCCCU   1543

3.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
EU968801.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *||||||=||||||||||*|||||
targets:549   AAUUGGUGUAACCGAACAUGCCCU   572

2.5 Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds NA coding protein psRNATarget
NM_001157439.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *||||||=||||||||||*|||||
targets:549   AAUUGGUGUAACCGAACAUGCCCU   572

2.5 Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA NA coding protein psRNATarget
HI409644.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*||*|||||||||||||||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

1.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
JB170105.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*||*|||||||||||||||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

1.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
LQ241774.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*||*|||||||||||||||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

1.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
XM_020540164.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||||||*|||*||||||||||||
targets:1624   GAUUGGUCUAAACGAACAAGCCCU   1647

2.5 PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*||*|||||||||||||||||
targets:2523   GAUAGGAAUAACCGAACAAGCCCU   2546

1.0 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |||*||*|||||||||||||||||
targets:303   GAUAGGAAUAACCGAACAAGCCCU   326

1.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
HI405827.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:111   UAUUGGGAAUAACCGAACAAGCCCU   135

3.0 Sequence 3952 from Patent EP2074227 NA coding protein psRNATarget
JB166288.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:111   UAUUGGGAAUAACCGAACAAGCCCU   135

3.0 Sequence 3952 from Patent EP2559767 NA coding protein psRNATarget
LQ237957.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:111   UAUUGGGAAUAACCGAACAAGCCCU   135

3.0 Sequence 3952 from Patent EP2985353 NA coding protein psRNATarget
HI405876.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:113   UAUUGGGAAUAACCGAACAAGCCCU   137

3.0 Sequence 4001 from Patent EP2074227 NA coding protein psRNATarget
LQ238006.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:113   UAUUGGGAAUAACCGAACAAGCCCU   137

3.0 Sequence 4001 from Patent EP2985353 NA coding protein psRNATarget
JB166337.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:113   UAUUGGGAAUAACCGAACAAGCCCU   137

3.0 Sequence 4001 from Patent EP2559767 NA coding protein psRNATarget
HI405837.1
ncRNA:24   CUAAC-CAUAUUGGCUUGUUCGGGA   1
  *||||-|*|||||||||||||||||
targets:114   UAUUGAGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3962 from Patent EP2074227 NA coding protein psRNATarget
LQ237967.1
ncRNA:24   CUAAC-CAUAUUGGCUUGUUCGGGA   1
  *||||-|*|||||||||||||||||
targets:114   UAUUGAGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3962 from Patent EP2985353 NA coding protein psRNATarget
JB166298.1
ncRNA:24   CUAAC-CAUAUUGGCUUGUUCGGGA   1
  *||||-|*|||||||||||||||||
targets:114   UAUUGAGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3962 from Patent EP2559767 NA coding protein psRNATarget
JB166293.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
HI405825.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGAAAUAACCGAACAAGCCCU   139

3.0 Sequence 3950 from Patent EP2074227 NA coding protein psRNATarget
JB166286.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGAAAUAACCGAACAAGCCCU   139

3.0 Sequence 3950 from Patent EP2559767 NA coding protein psRNATarget
JB166342.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4006 from Patent EP2559767 NA coding protein psRNATarget
LQ238011.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4006 from Patent EP2985353 NA coding protein psRNATarget
HI405823.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

1.0 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
HI405880.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4005 from Patent EP2074227 NA coding protein psRNATarget
JB166301.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
LQ237955.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGAAAUAACCGAACAAGCCCU   139

3.0 Sequence 3950 from Patent EP2985353 NA coding protein psRNATarget
JB166341.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4005 from Patent EP2559767 NA coding protein psRNATarget
LQ237962.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
LQ237970.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
JB166284.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

1.0 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
LQ237953.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

1.0 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405832.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
HI405840.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
HI405881.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4006 from Patent EP2074227 NA coding protein psRNATarget
LQ238010.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 4005 from Patent EP2985353 NA coding protein psRNATarget
JB166347.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:118   UAUUGGGAAUAACCGAACAAGCCCU   142

3.0 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
LQ238016.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:118   UAUUGGGAAUAACCGAACAAGCCCU   142

3.0 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
HI405886.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:118   UAUUGGGAAUAACCGAACAAGCCCU   142

3.0 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
EU942632.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:281   UAUUGGGAAUAACCGAACAAGCCCU   305

3.0 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
EU957313.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:759   UAUUGGGAAUAACCGAACAAGCCCU   783

3.0 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:759   UAUUGGGAAUAACCGAACAAGCCCU   783

3.0 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:792   UAUUGGGAAUAACCGAACAAGCCCU   816

3.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:792   UAUUGGGAAUAACCGAACAAGCCCU   816

3.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
BT018247.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:483   UAUUGGGAAUAACCGAACAAGCCCU   507

3.0 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
EU963259.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1035   UAUUGGGAAUAACCGAACAAGCCCU   1059

3.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
NM_001174684.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1314   UAUUGGGAAUAACCGAACAAGCCCU   1338

3.0 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
BT062563.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1314   UAUUGGGAAUAACCGAACAAGCCCU   1338

3.0 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
NM_001175812.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1544   UAUUGGGAAUAACCGAACAAGCCCU   1568

3.0 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
BT066364.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1544   UAUUGGGAAUAACCGAACAAGCCCU   1568

3.0 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
XM_008669845.2
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:1821   UAUUGGGAAUAACCGAACAAGCCCU   1845

3.0 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:2128   UAUUGGGAAUAACCGAACAAGCCCU   2152

3.0 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
XM_020539702.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:2577   UAUUGGGAAUAACCGAACAAGCCCU   2601

3.0 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  *|||||*|-||||||||||||||||
targets:2557   UAUUGGGAAUAACCGAACAAGCCCU   2581

3.0 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:2874   UAUUAGGAAUAACCGAACAAGCCCU   2898

1.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:2883   UAUUAGGAAUAACCGAACAAGCCCU   2907

1.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3709   UAUUAGGAAUAACCGAACAAGCCCU   3733

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3733   UAUUAGGAAUAACCGAACAAGCCCU   3757

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3787   UAUUAGGAAUAACCGAACAAGCCCU   3811

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3781   UAUUAGGAAUAACCGAACAAGCCCU   3805

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3789   UAUUAGGAAUAACCGAACAAGCCCU   3813

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3776   UAUUAGGAAUAACCGAACAAGCCCU   3800

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:3851   UAUUAGGAAUAACCGAACAAGCCCU   3875

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:4175   UAUUAGGAAUAACCGAACAAGCCCU   4199

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUUCGGGA   1
  *|||-||*|||||||||||||||||
targets:4271   UAUUAGGAAUAACCGAACAAGCCCU   4295

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||||||||
targets:898   CAUUCCGGUACAACCGAACAAGCCCU   923

1.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||||||||
targets:993   CAUUCCGGUACAACCGAACAAGCCCU   1018

1.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
EZ110342.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *||||**|||||||||||||||||
targets:35   AAUUGAAAUAACCGAACAAGCCCU   58

2.0 TSA: Zea mays contig46002, mRNA sequence NA coding protein psRNATarget
XM_020542807.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *|||||*|||||||||||||*|||
targets:2565   AAUUGGAAUAACCGAACAAGGCCU   2588

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542806.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *|||||*|||||||||||||*|||
targets:2565   AAUUGGAAUAACCGAACAAGGCCU   2588

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542805.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  *|||||*|||||||||||||*|||
targets:2565   AAUUGGAAUAACCGAACAAGGCCU   2588

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA NA coding protein psRNATarget
EU949284.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |=||*|*=||||||||||||||||
targets:659   GGUUAGCGUAACCGAACAAGCCCU   682

2.0 Zea mays clone 400720 mRNA sequence NA coding protein psRNATarget
DQ244893.1
ncRNA:24   CUAACCAUAUUGGCUUGUUCGGGA   1
  |=||*|*=||||||||||||||||
targets:759   GGUUAGCGUAACCGAACAAGCCCU   782

2.0 Zea mays clone 11585 mRNA sequence NA coding protein psRNATarget
LQ235264.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1259 from Patent EP2985353 NA coding protein psRNATarget
HI403083.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
LQ235198.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1193 from Patent EP2985353 NA coding protein psRNATarget
JB163589.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--|*||||||||||||=|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
HI403060.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
HI403134.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1259 from Patent EP2074227 NA coding protein psRNATarget
LQ235195.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
LQ235190.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
LQ235258.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--|*||||||||||||=|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
HI403065.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
HI402959.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1084 from Patent EP2074227 NA coding protein psRNATarget
JB163420.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1084 from Patent EP2559767 NA coding protein psRNATarget
JB163529.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1193 from Patent EP2559767 NA coding protein psRNATarget
HI403128.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--|*||||||||||||=|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
JB163521.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
LQ235213.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
JB163526.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
LQ235089.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1084 from Patent EP2985353 NA coding protein psRNATarget
JB163544.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
JB163595.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1259 from Patent EP2559767 NA coding protein psRNATarget
HI403068.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:104   UAUUCCGGUACAACCGAACGAGCCCU   129

2.5 Sequence 1193 from Patent EP2074227 NA coding protein psRNATarget
XM_020538562.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*||||||||=||||||
targets:37   UAUUUCGGUACAACCGAACGAGCCCU   62

2.5 PREDICTED: Zea mays uncharacterized LOC109939968 (LOC109939968), mRNA NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:2294   UAUUCCGGUACAACCGAACAGGCCCU   2319

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:2311   UAUUCCGGUACAACCGAACAGGCCCU   2336

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547701.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:5   CAUUCUGGUACAACCGAACAGGCCCU   30

2.5 PREDICTED: Zea mays uncharacterized LOC100281197 (si660042c08), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546999.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547000.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546998.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547015.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X18, mRNA NA coding protein psRNATarget
XM_020547006.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020547004.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547012.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020547005.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020547003.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547001.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547002.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUUCGGGA   1
  *|||--||||*|||||||||=|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X5, mRNA NA coding protein psRNATarget
JB166305.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:114   UUUUGGGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3969 from Patent EP2559767 NA coding protein psRNATarget
LQ237974.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:114   UUUUGGGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3969 from Patent EP2985353 NA coding protein psRNATarget
HI405844.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:114   UUUUGGGAAUAACCGAACAAGCCCU   138

3.0 Sequence 3969 from Patent EP2074227 NA coding protein psRNATarget
LQ237981.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3976 from Patent EP2985353 NA coding protein psRNATarget
LQ237965.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3960 from Patent EP2985353 NA coding protein psRNATarget
HI405835.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3960 from Patent EP2074227 NA coding protein psRNATarget
HI405851.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3976 from Patent EP2074227 NA coding protein psRNATarget
JB166312.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3976 from Patent EP2559767 NA coding protein psRNATarget
JB166296.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:115   UUUUGGGAAUAACCGAACAAGCCCU   139

3.0 Sequence 3960 from Patent EP2559767 NA coding protein psRNATarget
EU968099.1
ncRNA:24   CUAACCAU-AUUGGCUUGUUCGGGA   1
  **||||*|-||||||||||||||||
targets:248   UUUUGGGAAUAACCGAACAAGCCCU   272

3.0 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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