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BaseInfo

ncRNA ID	novel_zma_miR4086
Species	Zea mays
Class	miRNA
Genome position	Chr10:93122187-93122238 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	22
Mature sequence(if miRNA)	31 - AUGAUGUUUCUCAUGUUUCAUA - 52
Stem-loop(if miRNA)	--C         AG       UA   U    GAAAUAUGA  GAUGUCA  UGA U    |||||||||  |||||||  |||    CUUUGUACU  UUGUAGU  ACU A AUA         CU       --   U
Stem-loop sequence	CGAAAUAUGAAGGAUGUCAUAUGAUUAUUCAUGAUGUUUCUCAUGUUUCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546576.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||||||||||||| targets:3909   CAUGAAACAUGAGAAACAUCAU   3930 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103641239 (LOC103641239), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546574.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||||||||||||| targets:4008   CAUGAAACAUGAGAAACAUCAU   4029 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103641239 (LOC103641239), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546573.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||||||||||||| targets:4009   CAUGAAACAUGAGAAACAUCAU   4030 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103641239 (LOC103641239), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546575.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||||||||||||| targets:4109   CAUGAAACAUGAGAAACAUCAU   4130 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103641239 (LOC103641239), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT037905.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   ||||||||||||||||||*||| targets:928   UAUGAAACAUGAGAAACAACAU   949 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0202E04 mRNA, complete cds	NA	coding protein	psRNATarget
BT043463.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   |=||==|||||||||||||||| targets:1260   UGUGGGACAUGAGAAACAUCAU   1281 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0192J17 mRNA, complete cds	NA	coding protein	psRNATarget
BT055773.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   |=||==|||||||||||||||| targets:1287   UGUGGGACAUGAGAAACAUCAU   1308 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0182L09 mRNA, complete cds	NA	coding protein	psRNATarget
EU953480.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   |=||==|||||||||||||||| targets:1287   UGUGGGACAUGAGAAACAUCAU   1308 Target Full Sequence	2.0	Zea mays clone 1420621 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149157.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   |=||==|||||||||||||||| targets:1287   UGUGGGACAUGAGAAACAUCAU   1308 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100274901), mRNA	NA	coding protein	psRNATarget
XM_020546578.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||=|||||||||* targets:2286   CAUGAAACAUGGGAAACAUCAC   2307 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase MINDY-2-like (LOC103641269), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546577.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||=|||||||||* targets:2305   CAUGAAACAUGGGAAACAUCAC   2326 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase MINDY-2-like (LOC103641269), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546571.1	ncRNA:22   AUACUUUGUACUCUUUGUAGUA   1   *||||||||||=|||||||||* targets:6326   CAUGAAACAUGGGAAACAUCAC   6347 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103641258 (LOC103641258), transcript variant X16, mRNA	NA	coding protein	psRNATarget