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BaseInfo

ncRNA ID	novel_zma_miR4083
Species	Zea mays
Class	miRNA
Genome position	Chr1:44560838-44560894 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - GAUUUCUAUUUUUCUAAGGAAAAU - 24
Stem-loop(if miRNA)	--            U          UUA   GAUUUCUAUUUU CUAAGGAAAA   G   |||||||||||| ||||||||||   U   CUAAGGAUAAAA GGUUUCUUUU   U UU            U          UAU
Stem-loop sequence	GAUUUCUAUUUUUCUAAGGAAAAUUAGUUUAUUUUUCUUUGGUAAAAUAGGAAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055900.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |||||=|||||=|||||||||||| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0026G06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153204.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |||||=|||||=|||||||||||| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.5	Zea mays Omega-amidase chloroplastic (LOC100280276), mRNA	NA	coding protein	psRNATarget
BT085017.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |||||=|||=|||||||||||||| targets:1515   AUUUUUCUUGGAAAAAUAGAAAUC   1538 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0227H04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546085.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   ||||||||||||||||||*||||| targets:4474   AUUUUCCUUAGAAAAAUAAAAAUC   4497 Target Full Sequence	1.5	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008664818.2	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   ||||||||||||||||||*||||| targets:4455   AUUUUCCUUAGAAAAAUAAAAAUC   4478 Target Full Sequence	1.5	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||||||=|=|||||||||||| targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT043451.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |||||=|||||*|||||||||||| targets:737   AUUUUUCUUAGUAAAAUAGAAAUC   760 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0190D10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165454.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |||||=|||||*|||||||||||| targets:737   AUUUUUCUUAGUAAAAUAGAAAUC   760 Target Full Sequence	2.5	Zea mays 40S ribosomal protein S19 mitochondrial (LOC100303826), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   ||||*||||=|=|||||||||||| targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770 Target Full Sequence	2.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
BT069650.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |*|||==||||||||||||||||| targets:87   AGUUUUUUUAGAAAAAUAGAAAUC   110 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0194N18 mRNA, complete cds	NA	coding protein	psRNATarget
EU964244.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   |*|||==||||||||||||||||| targets:49   AGUUUUUUUAGAAAAAUAGAAAUC   72 Target Full Sequence	2.0	Zea mays clone 277280 glutathione S-transferase GSTF2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||||*|||=|||||||||||| targets:4167   UUUUUCCAUAGGAAAAUAGAAAUC   4190 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
XM_020553277.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||=|*|=|||||||||||||| targets:2464   UUUUUUCGUGGAAAAAUAGAAAUC   2487 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553278.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||=|*|=|||||||||||||| targets:2453   UUUUUUCGUGGAAAAAUAGAAAUC   2476 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054753.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||=|*|=|||||||||||||| targets:2376   UUUUUUCGUGGAAAAAUAGAAAUC   2399 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0025A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152676.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||=|*|=|||||||||||||| targets:2376   UUUUUUCGUGGAAAAAUAGAAAUC   2399 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279717 (cl715_-2a), mRNA	NA	coding protein	psRNATarget
EU942948.1	ncRNA:24   UAAAAGGAAUCUUUUUAUCUUUAG   1   *||||=|*|=|||||||||||||| targets:7   UUUUUUCGUGGAAAAAUAGAAAUC   30 Target Full Sequence	3.0	Zea mays clone 1547322 mRNA sequence	NA	coding protein	psRNATarget