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BaseInfo

ncRNA ID	novel_zma_miR4080
Species	Zea mays
Class	miRNA
Genome position	Chr10:133223945-133224057 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	22
Mature sequence(if miRNA)	1 - GUGAUUAGUCGCGAUUAGUCGG - 22
Stem-loop(if miRNA)	GUGAUUAG               CUUAUCGCU    U  --    GAUUAGGGUCUCCGACUCGA         UCGCGAUUAGUCGGC         AGUC GA  GCUC                    C         |||||||||||||||         |||| ||  ||||                    U         AGCGCUAAUCAGCCG         CUGA UC  GCUG                    A --------               ---------    -  CU    AUUAGCGAUGGAUCAGCGAG
Stem-loop sequence	GUGAUUAGUCGCGAUUAGUCGGCCUUAUCGCUAGUCUGAGCUCGAUUAGGGUCUCCGACUCGACUAGAGCGACUAGGUAGCGAUUAGUCGUCCUAGUCGCCGACUAAUCGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551348.1	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   ||||||||||||||||||||=| targets:1951   CCGACUAAUCGCGACUAAUCGC   1972 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008678532.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   ||||||||||||||||||||=| targets:2253   CCGACUAAUCGCGACUAAUCGC   2274 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008678531.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   ||||||||||||||||||||=| targets:2269   CCGACUAAUCGCGACUAAUCGC   2290 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008678530.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   ||||||||||||||||||||=| targets:2307   CCGACUAAUCGCGACUAAUCGC   2328 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008678529.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   ||||||||||||||||||||=| targets:2313   CCGACUAAUCGCGACUAAUCGC   2334 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100272605), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649604.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   *|||=|||||||||||||||=| targets:2756   ACGAUUAAUCGCGACUAAUCGC   2777 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger C-x8-C-x5-C-x3-H type family protein (LOC100281752), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_008646086.2	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   |=||||||||||||||||*||| targets:132   CUGACUAAUCGCGACUAACCAC   153 Target Full Sequence	1.5	PREDICTED: Zea mays TRF-like 10 (LOC103625700), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU952643.1	ncRNA:22   GGCUGAUUAGCGCUGAUUAGUG   1   *=||=|||||||||=||||||| targets:887   GUGAUUAAUCGCGAUUAAUCAC   908 Target Full Sequence	2.5	Zea mays clone 1285216 mRNA sequence	NA	coding protein	psRNATarget