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BaseInfo

ncRNA ID novel_zma_miR4060
Species Zea mays
Class miRNA
Genome position Chr5:201735697-201735828 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161;SRR2287163
Length 24
Mature sequence(if miRNA) 1 - AGGGCAUGUUCGGUUAUACCAAUC - 24
Stem-loop(if miRNA) --     A            C    C      A    GGU        UAAU     -C     CAA
  AGGGC UGUUCGGUUAUA CAAU CAGAAG GGAU   AGGAGAUU    UCUCU  CUAGU   A
  ||||| |||||||||||| |||| |||||| ||||   ||||||||    |||||  |||||
  UCCCG ACAAGCCAAUGU GUUA GUUUUC CCUA   UUCUUUAA    AGAGA  GAUCA   A
AA     A            U    A      A    ACU        -UUU     AA     AUA
Stem-loop sequence AGGGCAUGUUCGGUUAUACCAAUCCAGAAGAGGAUGGUAGGAGAUUUAAUUCUCUCCUAGUCAAAAAUAACUAGAAAGAGAUUUAAUUUCUUUCAAUCCACUUUUGAAUUGUUGUAACCGAACAAGCCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542894.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||=||||||||||||||||
targets:21   GAUUGGUGUAACCGAACAUGCCCU   44

1.0 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA NA coding protein psRNATarget
EU968801.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  *||||||=||||||||||||||||
targets:549   AAUUGGUGUAACCGAACAUGCCCU   572

1.0 Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds NA coding protein psRNATarget
NM_001157439.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  *||||||=||||||||||||||||
targets:549   AAUUGGUGUAACCGAACAUGCCCU   572

1.0 Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA NA coding protein psRNATarget
XM_020548160.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||=||||||||||*|||||
targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841

2.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||=||||||||||*|||||
targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068

2.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
LQ240847.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||*|||*||||||||||||
targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59

2.5 Sequence 6842 from Patent EP2985353 NA coding protein psRNATarget
JB169178.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||*|||*||||||||||||
targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59

2.5 Sequence 6842 from Patent EP2559767 NA coding protein psRNATarget
HI408717.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||||||*|||*||||||||||||
targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59

2.5 Sequence 6842 from Patent EP2074227 NA coding protein psRNATarget
BT035338.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  *=|||||=|||||||||||*||||
targets:1129   UGUUGGUGUAACCGAACAUACCCU   1152

2.5 Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds NA coding protein psRNATarget
NM_001138309.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  *=|||||=|||||||||||*||||
targets:1129   UGUUGGUGUAACCGAACAUACCCU   1152

2.5 Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA NA coding protein psRNATarget
EU957179.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*|||=||||||||||*|||||
targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607

2.5 Zea mays clone 1584995 mRNA sequence NA coding protein psRNATarget
LQ241774.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*||*|||||||||||*|||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

2.5 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
JB170105.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*||*|||||||||||*|||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

2.5 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
HI409644.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*||*|||||||||||*|||||
targets:121   GAUAGGAAUAACCGAACAAGCCCU   144

2.5 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*||*|||||||||||*|||||
targets:2523   GAUAGGAAUAACCGAACAAGCCCU   2546

2.5 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   CUAACCAUAUUGGCUUGUACGGGA   1
  |||*||*|||||||||||*|||||
targets:303   GAUAGGAAUAACCGAACAAGCCCU   326

2.5 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
LQ237953.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

2.5 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405823.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

2.5 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
JB166284.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:115   UAUUAGGAAUAACCGAACAAGCCCU   139

2.5 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:2874   UAUUAGGAAUAACCGAACAAGCCCU   2898

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:2883   UAUUAGGAAUAACCGAACAAGCCCU   2907

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3709   UAUUAGGAAUAACCGAACAAGCCCU   3733

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3733   UAUUAGGAAUAACCGAACAAGCCCU   3757

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3787   UAUUAGGAAUAACCGAACAAGCCCU   3811

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3781   UAUUAGGAAUAACCGAACAAGCCCU   3805

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3789   UAUUAGGAAUAACCGAACAAGCCCU   3813

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3776   UAUUAGGAAUAACCGAACAAGCCCU   3800

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:3851   UAUUAGGAAUAACCGAACAAGCCCU   3875

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:4175   UAUUAGGAAUAACCGAACAAGCCCU   4199

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   CUAA-CCAUAUUGGCUUGUACGGGA   1
  *|||-||*|||||||||||*|||||
targets:4271   UAUUAGGAAUAACCGAACAAGCCCU   4295

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
JB163521.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
HI403128.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--|*||||||||||||*|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
LQ235190.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
HI403060.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
LQ235213.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
LQ235195.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
JB163589.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--|*||||||||||||*|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
JB163526.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
JB163544.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
HI403083.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
HI403065.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:104   CAUUCCGGUACAACCGAACAGGCCCU   129

2.5 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
LQ235258.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--|*||||||||||||*|||||
targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129

2.5 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:898   CAUUCCGGUACAACCGAACAAGCCCU   923

2.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:993   CAUUCCGGUACAACCGAACAAGCCCU   1018

2.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:2294   UAUUCCGGUACAACCGAACAGGCCCU   2319

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:2311   UAUUCCGGUACAACCGAACAGGCCCU   2336

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547701.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:5   CAUUCUGGUACAACCGAACAGGCCCU   30

2.5 PREDICTED: Zea mays uncharacterized LOC100281197 (si660042c08), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546999.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547000.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546998.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:482   UAUUCCGGUACAACCGAACAGGCCCU   507

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547015.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X18, mRNA NA coding protein psRNATarget
XM_020547006.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020547004.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547012.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020547005.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020547003.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547001.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547002.1
ncRNA:24   CUAA--CCAUAUUGGCUUGUACGGGA   1
  *|||--||||*|||||||||*|||||
targets:481   UAUUCCGGUACAACCGAACAGGCCCU   506

2.5 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X5, mRNA NA coding protein psRNATarget
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