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BaseInfo

ncRNA ID	novel_zma_miR4059
Species	Zea mays
Class	miRNA
Genome position	Chr5:194121478-194121554 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	54 - ACAAGUAUUUGAGAACGGAGGUAG - 77
Stem-loop(if miRNA)	--            UUU       CG    -      AAA   AUCUCCGUUCUU   UAUUUGU  UGUU UUAGUU   A   ||||||||||||   |||||||  |||| ||||||   UGGAGGCAAGAG   AUGAACA  ACAG GAUCAA   A GA            UUU       --    C      GUA
Stem-loop sequence	AUCUCCGUUCUUUUUUAUUUGUCGUGUUUUAGUUAAAAAAUGAACUAGCGACAACAAGUAUUUGAGAACGGAGGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ084539.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||||||||||||||||||=|||| targets:19   CUACCUCCGUUCUCAAAUAUUUGU   42 Target Full Sequence	1.5	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
BT060531.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||||||||||||||||||=|||| targets:413   CUACCUCCGUUCUCAAAUAUUUGU   436 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds	NA	coding protein	psRNATarget
AY104299.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||||||||||||||||||=|||| targets:1269   CUACCUCCGUUCUCAAAUAUUUGU   1292 Target Full Sequence	1.5	Zea mays PCO075569 mRNA sequence	NA	coding protein	psRNATarget
NM_001157753.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1519   CUAUCUCCGUUCUCAAAUAUUUGU   1542 Target Full Sequence	1.5	Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA	NA	coding protein	psRNATarget
EU969922.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1519   CUAUCUCCGUUCUCAAAUAUUUGU   1542 Target Full Sequence	1.5	Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680960.2	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1899   CUAUCUCCGUUCUCAAAUAUUUGU   1922 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680966.2	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1887   CUAUCUCCGUUCUCAAAUAUUUGU   1910 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT086185.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1887   CUAUCUCCGUUCUCAAAUAUUUGU   1910 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680954.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1898   CUAUCUCCGUUCUCAAAUAUUUGU   1921 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680972.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||=|||||||||||||||=|||| targets:1946   CUAUCUCCGUUCUCAAAUAUUUGU   1969 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001150369.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   =|=|=||||||||||||||=|||| targets:657   UUGCUUCCGUUCUCAAAUAUUUGU   680 Target Full Sequence	1.5	Zea mays Cyclin-dependent protein kinase inhibitor EL2 (umc1277), mRNA	NA	coding protein	psRNATarget
EU963785.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   =|=|=||||||||||||||=|||| targets:657   UUGCUUCCGUUCUCAAAUAUUUGU   680 Target Full Sequence	1.5	Zea mays clone 272643 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553254.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||||||*|||||||||||=|||| targets:690   CUACCUCGGUUCUCAAAUAUUUGU   713 Target Full Sequence	2.5	PREDICTED: Zea mays putative phototropic-resoponsive NPH3 family protein (LOC100278373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ053485.1	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   |||*||=||||||||||||=|||| targets:152   CUAACUUCGUUCUCAAAUAUUUGU   175 Target Full Sequence	2.5	TSA: Zea mays contig54607, mRNA sequence	NA	coding protein	psRNATarget
BT055687.2	ncRNA:24   GAUGGAGGCAAGAGUUUAUGAACA   1   *||*|||||||||||||||=|||| targets:89   GUAACUCCGUUCUCAAAUAUUUGU   112 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0118D04 mRNA, complete cds	NA	coding protein	psRNATarget