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BaseInfo

ncRNA ID	novel_zma_miR4055
Species	Zea mays
Class	miRNA
Genome position	Chr4:168605765-168605929 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	142 - UGUGGCCCAGAUUAGAAGUUUGCA - 165
Stem-loop(if miRNA)	--               AA       U        C      -     C G A      GAGGGA G      AA AG   GAU   CAAACUUCUAAUCUG  CCACAUG UGUUGAUC AAGGGG GCGUG G G GAGUGG      G AUUUGA  A  UGU   U   |||||||||||||||  ||||||| |||||||| |||||| ||||| | | ||||||      | ||||||  |  |||   GUUUGAAGAUUAGAC  GGUGUAU ACAACUAG UUCCCU UGUAC C C CUUAUU      U UGAAUU  U  GCG   A AC               CC       U        A      G     A G A      --AAGA G      GG GG   ACG
Stem-loop sequence	CAAACUUCUAAUCUGAACCACAUGUUGUUGAUCCAAGGGGGCGUGCGGGAGAGUGGGAGGGAGGAUUUGAAAAAGUGUGAUUAGCAGCGGGUGGUUAAGUGUAGAAUUAUUCACGCACAUGUGUCCCUUAGAUCAACAUUAUGUGGCCCAGAUUAGAAGUUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402920.1	ncRNA:22   GUUUGAAGAUUAGACCCGGUGU   1   |||||||||||||||||||||| targets:1   CAAACUUCUAAUCUGGGCCACA   22 Target Full Sequence	0.0	Sequence 1045 from Patent EP2074227	NA	coding protein	psRNATarget
JB163381.1	ncRNA:22   GUUUGAAGAUUAGACCCGGUGU   1   |||||||||||||||||||||| targets:1   CAAACUUCUAAUCUGGGCCACA   22 Target Full Sequence	0.0	Sequence 1045 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235050.1	ncRNA:22   GUUUGAAGAUUAGACCCGGUGU   1   |||||||||||||||||||||| targets:1   CAAACUUCUAAUCUGGGCCACA   22 Target Full Sequence	0.0	Sequence 1045 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547993.1	ncRNA:24   ACGUUUGAAGAUUAGACCCGGUGU   1   |||||||||=||||||*||||||| targets:1472   UGCAAACUUUUAAUCUAGGCCACA   1495 Target Full Sequence	2.5	PREDICTED: Zea mays trehalose-6-phosphate phosphatase2 (LOC107546758), transcript variant X1, mRNA	NA	coding protein	psRNATarget