Search result

BaseInfo

ncRNA ID	osa-miRf10001-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGGGGAUAUUCCCUCAAGG - NA
Stem-loop(if miRNA)	A   A      --    UUU    UU AACGAGGGGAUAUUCCCUC AGG AUGAAA  ACAC   UCCG  U ||||||||||||||||||| ||| ||||||  ||||   |||| UUGCUCUCCUAUAGGGGAG UCC UACUUU  UGUG   AGGC  A                    C   C      UA    --U    UU
Stem-loop sequence	AACGAGGGGAUAUUCCCUCAAGGAAUGAAAACACUUUUCCGUUUAUUCGGAUGUGUAUUUUCAUCCCUCGAGGGGAUAUCCUCUCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015793191.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||||||||=|||||||||| targets:335   CCUUGAGGGGAUAUCCCCUC   354 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
XM_015793197.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||||||||=|||||||||| targets:337   CCUUGAGGGGAUAUCCCCUC   356 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
CT834684.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||*|||||=|||||||||| targets:774   CCUCGAGGGGAUAUCCCCUC   793 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064H11, full insert sequence	NA	coding protein	psRNATarget
CT833676.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||*|||||=|||||||||| targets:771   CCUCGAGGGGAUAUCCCCUC   790 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041C07, full insert sequence	NA	coding protein	psRNATarget
AK109561.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||*|||||=|||||||||| targets:1490   CCUCGAGGGGAUAUCCCCUC   1509 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-127-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015792164.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |||*|||||=|||||||||| targets:2255   CCUCGAGGGGAUAUCCCCUC   2274 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WAS/WASL-interacting protein family member 1 (LOC9271891), mRNA	WAS/WASL-interacting protein family member 1(LOC9271891)	coding protein	psRNATarget
XM_015757626.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   ||||*||||=|||||||||| targets:505   CCUUAAGGGGAUAUCCCCUC   524 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable zinc metalloprotease EGY2, chloroplastic (LOC4325486), transcript variant X2, mRNA	probable zinc metalloprotease EGY2, chloroplastic(LOC4325486)	coding protein	psRNATarget
XM_015782853.1	ncRNA:20   GGAACUCCCUUAUAGGGGAG   1   |***|||||||||||||||| targets:2   CAACGAGGGAAUAUCCCCUC   21 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (LOC9266544), mRNA	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3(LOC9266544)	coding protein	psRNATarget