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BaseInfo

ncRNA ID	novel_zma_miR4038
Species	Zea mays
Class	miRNA
Genome position	Chr4:182662555-182662638 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287165
Length	21
Mature sequence(if miRNA)	1 - UUGAAGGGGAUUGGAGAGGAU - 21
Stem-loop(if miRNA)	--UU A           GA              C   G   A     G AGGGGAUUGGA  GGAUUAAAUCUCUU CUA UCA A     | |||||||||||  |||||||||||||| ||| |||     C UCCCCUAACUU  CCUAAUUUAGGGGA GAU AGU A CUAU C           AC              A   A   A
Stem-loop sequence	UUGAAGGGGAUUGGAGAGGAUUAAAUCUCUUCCUAGUCAAAAAUGAAUAGAAGGGGAUUUAAUCCCAUUCAAUCCCCUCCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   *|||||||||||||||||||| targets:57   UUCCUCUCCAAUCCCCUUCAA   77 Target Full Sequence	0.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||||*|||||||||||||| targets:1022   AUCCUCACCAAUCCCCUUCAA   1042 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
HI403013.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:42   AUCCCCUCCAAUCUCCUUCAA   62 Target Full Sequence	2.5	Sequence 1138 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235143.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:42   AUCCCCUCCAAUCUCCUUCAA   62 Target Full Sequence	2.5	Sequence 1138 from Patent EP2985353	NA	coding protein	psRNATarget
JB163474.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:42   AUCCCCUCCAAUCUCCUUCAA   62 Target Full Sequence	2.5	Sequence 1138 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:3083   AUCCGCUCCAAUCUCCUUCAA   3103 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:3096   AUCCGCUCCAAUCUCCUUCAA   3116 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*||||||||=||||||| targets:3127   AUCCGCUCCAAUCUCCUUCAA   3147 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ111591.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   *||||||||*||||||||||| targets:73   UUCCUCUCCCAUCCCCUUCAA   93 Target Full Sequence	1.5	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   *|||*||=||||||||||||| targets:231   UUCCCCUUCAAUCCCCUUCAA   251 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*|||||||||||*|||| targets:3272   AUCCCCUCCAAUCCCCCUCAA   3292 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*|||||||||||*|||| targets:1593   AUCCCCUCCAAUCCCCCUCAA   1613 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*|||||||||||*|||| targets:1593   AUCCCCUCCAAUCCCCCUCAA   1613 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:21   UAGGAGAGGUUAGGGGAAGUU   1   ||||*|||||||||||*|||| targets:3920   AUCCACUCCAAUCCCCCUCAA   3940 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget