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BaseInfo

ncRNA ID	novel_zma_miR4036
Species	Zea mays
Class	miRNA
Genome position	Chr3:121205819-121205910 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CCAUAUGGAUUGGGUGGGAUUGGA - 24
Stem-loop(if miRNA)	--    A                   -----------   GUUUCAAUCCC   CCAU UGGAUUGGGUGGGAUUGGA           UGG           A   |||| |||||||||||||||||||           |||           A   GGUA ACCUAACCUACCCUAACCU           UUC           A AG    C                   UUUUUAACACU   UAAAACUGAAC
Stem-loop sequence	CCAUAUGGAUUGGGUGGGAUUGGAUGGGUUUCAAUCCCAAACAAGUCAAAAUCUUUCACAAUUUUUUCCAAUCCCAUCCAAUCCACAUGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669549.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||||||=|||||||||||| targets:2084   UCUAAUCCCACUCAAUCCAUAUGG   2107 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||||||=|||||||||||| targets:1367   UCUAAUCCCACUCAAUCCAUAUGG   1390 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:4248   UCCAAUCCCAUCCAAUCCAUAUGU   4271 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:4152   UCCAAUCCCAUCCAAUCCAUAUGU   4175 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3828   UCCAAUCCCAUCCAAUCCAUAUGU   3851 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3753   UCCAAUCCCAUCCAAUCCAUAUGU   3776 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3766   UCCAAUCCCAUCCAAUCCAUAUGU   3789 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3758   UCCAAUCCCAUCCAAUCCAUAUGU   3781 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3764   UCCAAUCCCAUCCAAUCCAUAUGU   3787 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3710   UCCAAUCCCAUCCAAUCCAUAUGU   3733 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:3686   UCCAAUCCCAUCCAAUCCAUAUGU   3709 Target Full Sequence	2.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
HI405823.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3948 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237953.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3948 from Patent EP2985353	NA	coding protein	psRNATarget
JB166284.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||||* targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3948 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	1.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	1.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	1.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
BT018765.1	ncRNA:24   AGGUUAGGGU-GGGUUAGGUAUACC   1   |||||||=||-|||||||||||||| targets:1250   UCCAAUCUCAUCCCAAUCCAUAUGG   1274 Target Full Sequence	3.0	Zea mays clone EL01N0524E08.d mRNA sequence	NA	coding protein	psRNATarget
BT042079.1	ncRNA:24   AGGUUAGGGU-GGGUUAGGUAUACC   1   |||||||=||-|||||||||||||| targets:1229   UCCAAUCUCAUCCCAAUCCAUAUGG   1253 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0126H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148335.1	ncRNA:24   AGGUUAGGGU-GGGUUAGGUAUACC   1   |||||||=||-|||||||||||||| targets:1229   UCCAAUCUCAUCCCAAUCCAUAUGG   1253 Target Full Sequence	3.0	Zea mays Methyltransferase family protein (LOC100273944), mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682725.2	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=|||||||=||||||||||||* targets:356   UCUAAUCCCAUCCAAUCCAUAUGA   379 Target Full Sequence	2.0	PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |=||||||||=||||||||||||* targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |=||||||||=||||||||||||* targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |=||||||||=||||||||||||* targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.0	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
EZ070047.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:33   UCCAAUCUCAUCCAAUCCAUAUGU   56 Target Full Sequence	3.0	TSA: Zea mays contig05683, mRNA sequence	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=||=||||||||||||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||*|||| targets:279   UCCAAUCCCAUCCAAUCCACAUGG   302 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551501.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||*|||| targets:1290   UCCAAUCCCAUCCAAUCCACAUGG   1313 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||||||||||||||*|||| targets:1529   UCUAAUCCCACCCAAUCCACAUGG   1552 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=|||||||||||*|||| targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241 Target Full Sequence	2.5	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
BT035134.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=|||||||||||*|||| targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=|||||||||||*|||| targets:1056   UCCAAUCUCACCCAAUCCACAUGG   1079 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |||||||=|||||||||||*|||| targets:1023   UCCAAUCUCACCCAAUCCACAUGG   1046 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget
JB170575.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||*|||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.5	Sequence 8239 from Patent EP2559767	NA	coding protein	psRNATarget
HI410114.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||*|||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.5	Sequence 8239 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242244.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||*|||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.5	Sequence 8239 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238086.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||*|| targets:73   UCCAAUCCCAUCCAAUCCAUACGG   96 Target Full Sequence	2.5	Sequence 4081 from Patent EP2985353	NA	coding protein	psRNATarget
HI405956.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||*|| targets:73   UCCAAUCCCAUCCAAUCCAUACGG   96 Target Full Sequence	2.5	Sequence 4081 from Patent EP2074227	NA	coding protein	psRNATarget
JB166417.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||||||||||=||||||||||*|| targets:73   UCCAAUCCCAUCCAAUCCAUACGG   96 Target Full Sequence	2.5	Sequence 4081 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008667530.2	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |=|||||=||=||||||||||||* targets:2816   UUCAAUCUCAUCCAAUCCAUAUGU   2839 Target Full Sequence	3.0	PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:1012   UCUAAUCUCAUCCAAUCCAUAUGU   1035 Target Full Sequence	3.0	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792 Target Full Sequence	3.0	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
EU946263.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   |=|||||=||=||||||||||||* targets:596   UUCAAUCUCAUCCAAUCCAUAUGU   619 Target Full Sequence	3.0	Zea mays clone 302506 mRNA sequence	NA	coding protein	psRNATarget
LQ237962.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3957 from Patent EP2985353	NA	coding protein	psRNATarget
HI405832.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3957 from Patent EP2074227	NA	coding protein	psRNATarget
JB166293.1	ncRNA:24   AGGUUAGGGUGGGUUAGGUAUACC   1   ||=||||=||=||||||||||||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	3.0	Sequence 3957 from Patent EP2559767	NA	coding protein	psRNATarget