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BaseInfo

ncRNA ID	novel_zma_miR4034
Species	Zea mays
Class	miRNA
Genome position	Chr3:2020778-2020951 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287161;SRR2647389;SRR2939884;SRR4237221;SRR4237222;SRR4237224;SRR4237227;SRR5105959;SRR5105961;SRR5105963
Length	19
Mature sequence(if miRNA)	156 - AGCUCCCUUCGAUCCAAUC - 174
Stem-loop(if miRNA)	--                 UC  G         ----    C    G  G  G    U     G      -CUCU       CAA  -  C   AGCUCCCUUCGAUCCAA  CA GAGGGGAAG    UGGU GGUU CA CU CCGG UCAUG AUACCU     GGUGCAG   UG GC G   |||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||   UCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCG CCGA GU GA GGCC AGUAC UGUGGG     UCACGUC   AC CG C CC                 -C  G         UACU    C    -  A  G    C     G      UACGU       UCC  U  U
Stem-loop sequence	AGCUCCCUUCGAUCCAAUCCAGGAGGGGAAGUGGUCGGUUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGCUGCUCACCUCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGAUGAGCCCGCCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235562.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1557 from Patent EP2985353	NA	coding protein	psRNATarget
JB163893.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1557 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235256.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1251 from Patent EP2985353	NA	coding protein	psRNATarget
HI403432.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1557 from Patent EP2074227	NA	coding protein	psRNATarget
HI403126.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1251 from Patent EP2074227	NA	coding protein	psRNATarget
JB163587.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:171   GUUUGGAUUGAAGGGAGCU   189 Target Full Sequence	2.5	Sequence 1251 from Patent EP2559767	NA	coding protein	psRNATarget
EU968889.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:236   GCUUGGAUUGAAGGGAGCU   254 Target Full Sequence	2.5	Zea mays clone 324744 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958700.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:252   GCUUGGAUUGAAGGGAGCU   270 Target Full Sequence	2.5	Zea mays clone 1710224 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958546.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:252   GCUUGGAUUGAAGGGAGCU   270 Target Full Sequence	2.5	Zea mays clone 1701645 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968724.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |*||||||=|||||||||| targets:277   GCUUGGAUUGAAGGGAGCU   295 Target Full Sequence	2.5	Zea mays clone 323714 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546009.1	ncRNA:19   CUAACCUAGCUUCCCUCGA   1   |||*||||||||||*|||| targets:264   GAUCGGAUCGAAGGUAGCU   282 Target Full Sequence	2.5	PREDICTED: Zea mays homeobox-leucine zipper protein ROC7 (LOC103641332), transcript variant X2, mRNA	NA	coding protein	psRNATarget