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BaseInfo

ncRNA ID	novel_zma_miR4030
Species	Zea mays
Class	miRNA
Genome position	Chr3:44219033-44219096 [-]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	41 - GAGGAUCGAAGGGGAUUGAGGGGG - 64
Stem-loop(if miRNA)	--                            UA   GAGGAUCGAAGGGGAUUGAGGGGGAAAU  G   ||||||||||||||||||||||||||||   CUCCUAGCUUCCCCUAACUCCCCCUUUA  U CU                            UU
Stem-loop sequence	GAGGAUCGAAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCCCCUCAAUCCCCUUCGAUCCUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551688.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||||||||||||||*|||||||| targets:2151   CCCCCUCAAUCCCCUCCGAUCCUC   2174 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:822   CCCCCUUAAUCCCCUUCAAUCCUC   845 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:861   CCCCCUUAAUCCCCUUCAAUCCUC   884 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:866   CCCCCUUAAUCCCCUUCAAUCCUC   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||||||=||||||||||*|||||| targets:866   CCCCCUUAAUCCCCUUCAAUCCUC   889 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||==|||||||||||*|||||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||==|||||||||||*|||||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||==|||||||||||*|||||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||=|||||||=||||*|||||||| targets:1848   CCUCCUCAAUUCCCUCCGAUCCUC   1871 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   ||=|||||||=||||*|||||||| targets:2286   CCUCCUCAAUUCCCUCCGAUCCUC   2309 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |||=||*|||||||||||||||*| targets:195   CCCUCUGAAUCCCCUUCGAUCCCC   218 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
S78780.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |=|=|*|||||||||||||||*|| targets:436   CUCUCCCAAUCCCCUUCGAUCAUC   459 Target Full Sequence	2.5	(gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt]	NA	coding protein	psRNATarget
AY109329.1	ncRNA:24   GGGGGAGUUAGGGGAAGCUAGGAG   1   |=|=|*|||||||||||||||*|| targets:436   CUCUCCCAAUCCCCUUCGAUCAUC   459 Target Full Sequence	2.5	Zea mays CL1979_1 mRNA sequence	NA	coding protein	psRNATarget