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BaseInfo

ncRNA ID novel_zma_miR4022
Species Zea mays
Class miRNA
Genome position Chr3:163778401-163778535 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 112 - CUAGUUUGGAUACUCUAGUAUUGA - 135
Stem-loop(if miRNA) --CUA      A              G UC           A       A             C   
     GUUUGG UACUCUAGUAUUGA C  AAUCCACGUGU UUGAGGU GAUUGGGGUGUAA UUAA
     |||||| |||||||||||||| |  ||||||||||| ||||||| ||||||||||||| |||A
     CAAACC AUGAGAUCAUAACU G  UUAGGUGUACA AACUCCA CUAACCCCACAUU AAUC
CGAAA      A              G GA           C       C             U   
Stem-loop sequence CUAGUUUGGAUACUCUAGUAUUGAGCUCAAUCCACGUGUAUUGAGGUAGAUUGGGGUGUAACUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGGAUUAGGGUCAAUACUAGAGUAACCAAACAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY103846.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||||||||||
targets:1009   UCAAUACUAGAGUAUCCAAACUAG   1032

0.0 Zea mays PCO130752 mRNA sequence NA coding protein psRNATarget
BT066687.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||||||||||
targets:905   UCAAUACUAGAGUAUCCAAACUAG   928

0.0 Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds NA coding protein psRNATarget
NM_001175915.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||||||||||
targets:905   UCAAUACUAGAGUAUCCAAACUAG   928

0.0 Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA NA coding protein psRNATarget
XM_008646892.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||=||||||*
targets:3419   UCAAUACUAGAGUAUCUAAACUAA   3442

2.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646891.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||=||||||*
targets:3324   UCAAUACUAGAGUAUCUAAACUAA   3347

2.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646893.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||||=||||||*
targets:3238   UCAAUACUAGAGUAUCUAAACUAA   3261

2.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020540884.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:3950   UCAAUACUAGAGUACCCAAACUAG   3973

1.5 PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||||||||||*||||||||||||
targets:2163   UCAAUACUAGAAUAUCCAAACUAG   2186

1.5 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||*|||||||||||
targets:1089   UCAAUACUAGAGCAUCCAAACUAG   1112

1.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
EU963895.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:1015   UCAAUACUAGAGUACCCAAACUAG   1038

1.5 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:918   UCAAUACUAGAGUACCCAAACUAG   941

1.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:918   UCAAUACUAGAGUACCCAAACUAG   941

1.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
BT068211.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||*|||||||||||
targets:846   UCAAUACUAGAGCAUCCAAACUAG   869

1.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||*|||||||||||
targets:846   UCAAUACUAGAGCAUCCAAACUAG   869

1.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EU941642.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:45   UCAAUACUAGAGUACCCAAACUAG   68

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
LQ235622.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:111   UCAAUACUAGAGUACCCAAACUAG   134

1.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
HI403492.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:111   UCAAUACUAGAGUACCCAAACUAG   134

1.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
JB163953.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:111   UCAAUACUAGAGUACCCAAACUAG   134

1.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
LQ235446.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:48   UCAAUACUAGAGUACCCAAACUAG   71

1.5 Sequence 1441 from Patent EP2985353 NA coding protein psRNATarget
JB163777.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:48   UCAAUACUAGAGUACCCAAACUAG   71

1.5 Sequence 1441 from Patent EP2559767 NA coding protein psRNATarget
HI403316.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*|||||||||
targets:48   UCAAUACUAGAGUACCCAAACUAG   71

1.5 Sequence 1441 from Patent EP2074227 NA coding protein psRNATarget
BT034601.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||=*||||||||||||||||||||
targets:1974   UCGUUACUAGAGUAUCCAAACUAG   1997

0.0 Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds NA coding protein psRNATarget
NM_001137799.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||=*||||||||||||||||||||
targets:1974   UCGUUACUAGAGUAUCCAAACUAG   1997

0.0 Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA NA coding protein psRNATarget
BT067545.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||=*||||||||||||||||||||
targets:1793   UCGUUACUAGAGUAUCCAAACUAG   1816

0.0 Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds NA coding protein psRNATarget
XM_008674068.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*|||||||||||||||||||*
targets:667   UCAUUACUAGAGUAUCCAAACUAA   690

1.0 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA NA coding protein psRNATarget
EU960123.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||||||||||||||||||||*|*
targets:1589   UCAAUACUAGAGUAUCCAAACAAA   1612

2.5 Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds NA coding protein psRNATarget
BT060604.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*|||||||||||||||||||*
targets:600   UCAUUACUAGAGUAUCCAAACUAA   623

1.0 Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds NA coding protein psRNATarget
EU963469.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*||||||||*
targets:1008   UCAAUACUAGAGUACCCAAACUAA   1031

2.5 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
BT019026.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||||||||||||||||||||*|*
targets:963   UCAAUACUAGAGUAUCCAAACAAA   986

2.5 Zea mays clone Contig531.F mRNA sequence NA coding protein psRNATarget
EU944570.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||||||||||||||||||||*|*
targets:742   UCAAUACUAGAGUAUCCAAACAAA   765

2.5 Zea mays clone 222723 mRNA sequence NA coding protein psRNATarget
JB167693.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*||||||||*
targets:58   UCAAUACUAGAGUACCCAAACUAA   81

2.5 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*||||||||*
targets:58   UCAAUACUAGAGUACCCAAACUAA   81

2.5 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
HI407232.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  ||||||||||||||*||||||||*
targets:58   UCAAUACUAGAGUACCCAAACUAA   81

2.5 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
XM_008670998.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:9   UCAUUACUAGAGUACCCAAACUAG   32

1.5 PREDICTED: Zea mays LETM1 and EF-hand domain-containing protein 1, mitochondrial (LOC103646271), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542702.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:87   UCAUUACUAGAGUACCCAAACUAG   110

1.5 PREDICTED: Zea mays aldehyde dehydrogenase family 2 member C4 (LOC103637346), mRNA NA coding protein psRNATarget
EU968340.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:737   UCACUACUAGAGUACCCAAACUAG   760

1.5 Zea mays clone 319179 mRNA sequence NA coding protein psRNATarget
EZ056559.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:17   UCAUUACUAGAGUACCCAAACUAG   40

1.5 TSA: Zea mays contig57681, mRNA sequence NA coding protein psRNATarget
LQ238700.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:113   UCAUUACUAGAGUACCCAAACUAG   136

1.5 Sequence 4695 from Patent EP2985353 NA coding protein psRNATarget
JB167031.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:113   UCAUUACUAGAGUACCCAAACUAG   136

1.5 Sequence 4695 from Patent EP2559767 NA coding protein psRNATarget
HI406570.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*|||||||||
targets:113   UCAUUACUAGAGUACCCAAACUAG   136

1.5 Sequence 4695 from Patent EP2074227 NA coding protein psRNATarget
JB167706.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  *||||||||||||||||||||*|*
targets:109   CCAAUACUAGAGUAUCCAAACAAA   132

2.5 Sequence 5370 from Patent EP2559767 NA coding protein psRNATarget
LQ239375.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  *||||||||||||||||||||*|*
targets:109   CCAAUACUAGAGUAUCCAAACAAA   132

2.5 Sequence 5370 from Patent EP2985353 NA coding protein psRNATarget
HI407245.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  *||||||||||||||||||||*|*
targets:109   CCAAUACUAGAGUAUCCAAACAAA   132

2.5 Sequence 5370 from Patent EP2074227 NA coding protein psRNATarget
XM_008660568.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:2798   UAAAUAUUAGAGUACCCAAACUAG   2821

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660567.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:2770   UAAAUAUUAGAGUACCCAAACUAG   2793

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660566.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:2739   UAAAUAUUAGAGUACCCAAACUAG   2762

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X1, mRNA NA coding protein psRNATarget
BT062480.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:1505   UAAAUAUUAGAGUACCCAAACUAG   1528

2.5 Zea mays full-length cDNA clone ZM_BFb0303E20 mRNA, complete cds NA coding protein psRNATarget
NM_001174655.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:1505   UAAAUAUUAGAGUACCCAAACUAG   1528

2.5 Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), mRNA NA coding protein psRNATarget
AY107149.2
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:1333   UAAAUAUUAGAGUACCCAAACUAG   1356

2.5 Zea mays PCO139446 mRNA sequence NA coding protein psRNATarget
EU328276.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:975   UAAAUAUUAGAGUACCCAAACUAG   998

2.5 Zea mays RFLP probe p-csu389 mRNA sequence NA coding protein psRNATarget
BT069728.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |*||||=|||||||*|||||||||
targets:390   UAAAUAUUAGAGUACCCAAACUAG   413

2.5 Zea mays full-length cDNA clone ZM_BFb0212B11 mRNA, complete cds NA coding protein psRNATarget
XM_008666548.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||||||*||||||||*
targets:254   UCAUUACUAGAGUACCCAAACUAA   277

2.5 PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA NA coding protein psRNATarget
EU942361.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |||*||||||*|||*|||||||||
targets:532   UCAUUACUAGUGUACCCAAACUAG   555

2.5 Zea mays clone 1487121 mRNA sequence NA coding protein psRNATarget
AY104485.1
ncRNA:24   AGUUAUGAUCUCAUAGGUUUGAUC   1
  |=|||*|*|*||||||||||||||
targets:1210   UUAAUCCAAAAGUAUCCAAACUAG   1233

3.0 Zea mays PCO125163 mRNA sequence NA coding protein psRNATarget
XM_020551172.1
ncRNA:24   AG-UUAUGAUCUCAUAGGUUUGAUC   1
  ||-|||*|*|*||||||||||||||
targets:1345   UCUAAUCCCAAAGUAUCCAAACUAG   1369

3.0 PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA NA coding protein psRNATarget
BT039083.1
ncRNA:24   AG-UUAUGAUCUCAUAGGUUUGAUC   1
  ||-|||*|*|*||||||||||||||
targets:1306   UCUAAUCCCAAAGUAUCCAAACUAG   1330

3.0 Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds NA coding protein psRNATarget
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