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BaseInfo

ncRNA ID	novel_zma_miR4017
Species	Zea mays
Class	miRNA
Genome position	Chr3:231184173-231184230 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287163
Length	24
Mature sequence(if miRNA)	35 - AAAAUAGGACUAUUUUCGGCGGCU - 58
Stem-loop(if miRNA)	--       --G              -      AAAAUAG   ACUAUUUUCGGCGG CUGU   |||||||   |||||||||||||| |||G   UUUUAUC   UGAUAAAAGCCGCC GACC GC       GUG              A
Stem-loop sequence	AAAAUAGGACUAUUUUCGGCGGCUGUGCCAGACCGCCGAAAAUAGUGUGCUAUUUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541607.1	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   =|||||||||||||||*||||||| targets:603   GGCCGCCGAAAAUAGUGCUAUUUU   626 Target Full Sequence	1.5	PREDICTED: Zea mays spidroin-1-like (LOC109941115), mRNA	NA	coding protein	psRNATarget
BT083546.1	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:104   AGU-GCGGAAAAUAGGCCUAUUUU   126 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0010M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU972505.1	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:115   AGU-GCGGAAAAUAGGCCUAUUUU   137 Target Full Sequence	2.5	Zea mays clone 382386 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159478.1	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:115   AGU-GCGGAAAAUAGGCCUAUUUU   137 Target Full Sequence	2.5	Zea mays protein binding protein (LOC100285489), mRNA	NA	coding protein	psRNATarget
XM_008678967.2	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:160   AGU-GCGGAAAAUAGGCCUAUUUU   182 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281338), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678969.2	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:136   AGU-GCGGAAAAUAGGCCUAUUUU   158 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281338), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008678968.2	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:136   AGU-GCGGAAAAUAGGCCUAUUUU   158 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281338), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551533.1	ncRNA:24   UCGGCGGCUUUUAUCAGGAUAAAA   1   ||=-||*||||||||*|||||||| targets:137   AGU-GCGGAAAAUAGGCCUAUUUU   159 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281338), transcript variant X4, mRNA	NA	coding protein	psRNATarget