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BaseInfo

ncRNA ID	novel_zma_miR4015
Species	Zea mays
Class	miRNA
Genome position	Chr3:223446082-223446232 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	22
Mature sequence(if miRNA)	130 - AACCGAACAAGCCCUUAGGUGG - 151
Stem-loop(if miRNA)	--AGUUU               AUU   -              G A         UAUGGAUUGGA    A   UG -   A        AGGGCUUGUUCGGUU   UUC AAUCCAUAUGGAUU G GGGGAUUGA           GGGG UUU  A CUU U        |||||||||||||||   ||| |||||||||||||| | |||||||||           |||| |||  | |||        UCCCGAACAAGCCAA   GGG UUAGGUAUACCUAA U CCCCUAACU           CCCC AAA  U GGG U GGUGGAU               GAU   A              G C         -----------    C   GU A   A
Stem-loop sequence	AGUUUAGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUAUGGAUUGGAGGGGAUUUUGACUUAUUAGGGAUUGAAACCCCCUCAAUCCCCCUGAAUCCAUAUGGAUUAGGGUAGAACCGAACAAGCCCUUAGGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068791.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||==||||||||||||||||| targets:1247   CCAUUUAAGGGCUUGUUCGGUU   1268 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ==|||||||||||||||||||| targets:1891   UUACCUAAGGGCUUGUUCGGUU   1912 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ==|||||||||||||||||||| targets:1891   UUACCUAAGGGCUUGUUCGGUU   1912 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||||=|=||||||||||||||| targets:359   CCACUUGAGGGCUUGUUCGGUU   380 Target Full Sequence	2.0	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
NM_001149888.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||*|||||||||||||||||| targets:624   CCAGCUAAGGGCUUGUUCGGUU   645 Target Full Sequence	1.0	Zea mays uncharacterized LOC100275986 (LOC100275986), mRNA	NA	coding protein	psRNATarget
EU959169.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||*|||||||||||||||||| targets:624   CCAGCUAAGGGCUUGUUCGGUU   645 Target Full Sequence	1.0	Zea mays clone 211416 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||||||*||||||||||||||| targets:164   CCACCUCAGGGCUUGUUCGGUU   185 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||||||*||||||||||||||| targets:164   CCACCUCAGGGCUUGUUCGGUU   185 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget
BT041742.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||||||||||||||||||*|| targets:1280   CCACCUAAGGGCUUGUUCGUUU   1301 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0042I18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148155.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||||||||||||||||||*|| targets:1280   CCACCUAAGGGCUUGUUCGUUU   1301 Target Full Sequence	1.5	Zea mays putative MADS-box transcription factor family protein (MADS71), mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||===||||||||||||||||| targets:90   CCGUUUAAGGGCUUGUUCGGUU   111 Target Full Sequence	2.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||||||||||||||||||*|| targets:1498   CCACCUAAGGGCUUGUUCGUUU   1519 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008648200.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =||==||||||||||||||||| targets:4237   UCAUUUAAGGGCUUGUUCGGUU   4258 Target Full Sequence	2.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008648199.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =||==||||||||||||||||| targets:4242   UCAUUUAAGGGCUUGUUCGGUU   4263 Target Full Sequence	2.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008648198.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =||==||||||||||||||||| targets:4334   UCAUUUAAGGGCUUGUUCGGUU   4355 Target Full Sequence	2.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648197.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =||==||||||||||||||||| targets:4338   UCAUUUAAGGGCUUGUUCGGUU   4359 Target Full Sequence	2.0	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942632.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||==||||||||||||||||| targets:160   ACAUUUAAGGGCUUGUUCGGUU   181 Target Full Sequence	2.0	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=||*||||||||||||||| targets:24   CCAUCUCAGGGCUUGUUCGGUU   45 Target Full Sequence	2.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:22   GGUG-GAUUCCCGAACAAGCCAA   1   *|||-|||||||||||||||||| targets:150   ACACACUAAGGGCUUGUUCGGUU   172 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:779   CCAUGUAAGGGCUUGUUCGGUU   800 Target Full Sequence	2.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:98   CCAUGUAAGGGCUUGUUCGGUU   119 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||*=||||||||||||||||| targets:1716   CCAAUUAAGGGCUUGUUCGGUU   1737 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||*=||||||||||||||||| targets:1732   CCAAUUAAGGGCUUGUUCGGUU   1753 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018572.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=||*||||||||||||||| targets:1741   CCAUCUUAGGGCUUGUUCGGUU   1762 Target Full Sequence	2.0	Zea mays clone EL01N0443D02.d mRNA sequence	NA	coding protein	psRNATarget
EU974800.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:2547   CCAUGUAAGGGCUUGUUCGGUU   2568 Target Full Sequence	2.0	Zea mays clone 458459 mRNA sequence	NA	coding protein	psRNATarget
XM_020547644.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|||||*||||||||||||||| targets:2504   UCACCUUAGGGCUUGUUCGGUU   2525 Target Full Sequence	1.0	PREDICTED: Zea mays putative ABC1 and kinase-like domain family protein (LOC100279203), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166283.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   **=||||||||||||||||||| targets:134   AGGCCUAAGGGCUUGUUCGGUU   155 Target Full Sequence	0.0	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   **=||||||||||||||||||| targets:134   AGGCCUAAGGGCUUGUUCGGUU   155 Target Full Sequence	0.0	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
HI405822.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   **=||||||||||||||||||| targets:134   AGGCCUAAGGGCUUGUUCGGUU   155 Target Full Sequence	0.0	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:3859   CCAUAUAAGGGCUUGUUCGGUU   3880 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:3972   CCAUAUAAGGGCUUGUUCGGUU   3993 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:4011   CCAUAUAAGGGCUUGUUCGGUU   4032 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||||=||||*|||||||||||| targets:1134   CCACUUAAGAGCUUGUUCGGUU   1155 Target Full Sequence	2.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:4759   CCAUAUAAGGGCUUGUUCGGUU   4780 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:4760   CCAUAUAAGGGCUUGUUCGGUU   4781 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*||||||||||||||||| targets:5822   CCAUAUAAGGGCUUGUUCGGUU   5843 Target Full Sequence	2.0	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget
EU946280.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*|||||||||||||||||| targets:592   ACAACUAAGGGCUUGUUCGGUU   613 Target Full Sequence	1.0	Zea mays clone 303329 mRNA sequence	NA	coding protein	psRNATarget
BT086570.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|||||*||||||||||||||| targets:118   ACACCUUAGGGCUUGUUCGGUU   139 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541453.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*|||||||||||||||||| targets:1936   ACAACUAAGGGCUUGUUCGGUU   1957 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X8, mRNA	NA	coding protein	psRNATarget
BT055107.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *=||||=||||||||||=|||| targets:133   GUACCUGAGGGCUUGUUUGGUU   154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348O22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654777.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*|||||||||||||||||| targets:2305   ACAACUAAGGGCUUGUUCGGUU   2326 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008654776.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*|||||||||||||||||| targets:2503   ACAACUAAGGGCUUGUUCGGUU   2524 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654775.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*|||||||||||||||||| targets:2505   ACAACUAAGGGCUUGUUCGGUU   2526 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944907.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *=*||||||||||||||||||| targets:243   AUUCCUAAGGGCUUGUUCGGUU   264 Target Full Sequence	0.0	Zea mays clone 235115 mRNA sequence	NA	coding protein	psRNATarget
EU972476.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |*||=|=||||||||||||||| targets:331   CAACUUGAGGGCUUGUUCGGUU   352 Target Full Sequence	2.0	Zea mays clone 381935 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|||=|||||*||||||||||| targets:93   UCACUUAAGGCCUUGUUCGGUU   114 Target Full Sequence	2.5	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
EU942557.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*=|||||||||||||||||| targets:472   CUCUCUAAGGGCUUGUUCGGUU   493 Target Full Sequence	1.0	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EU948993.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|||*|=||||||||||||||| targets:497   UCACGUGAGGGCUUGUUCGGUU   518 Target Full Sequence	2.0	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:827   CUAGCUGAGGGCUUGUUCGGUU   848 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:775   CUAGCUGAGGGCUUGUUCGGUU   796 Target Full Sequence	2.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959053.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:773   CUAGCUGAGGGCUUGUUCGGUU   794 Target Full Sequence	2.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:773   CUAGCUGAGGGCUUGUUCGGUU   794 Target Full Sequence	2.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:774   CUAGCUGAGGGCUUGUUCGGUU   795 Target Full Sequence	2.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=|*||=||||||||||||||| targets:846   CUAGCUGAGGGCUUGUUCGGUU   867 Target Full Sequence	2.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*|=||||||||||||||||| targets:1934   CUCCUUAAGGGCUUGUUCGGUU   1955 Target Full Sequence	1.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:22   GGUGGAU-UCCCGAACAAGCCAA   1   ||||||*-||||||||||||||| targets:2704   CCACCUUUAGGGCUUGUUCGGUU   2726 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:22   GGUGGAU-UCCCGAACAAGCCAA   1   ||||||*-||||||||||||||| targets:2808   CCACCUUUAGGGCUUGUUCGGUU   2830 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064472.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|=|*||||||||||||||||| targets:1332   ACGCGUAAGGGCUUGUUCGGUU   1353 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|=|*||||||||||||||||| targets:1376   ACGCGUAAGGGCUUGUUCGGUU   1397 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|=|*||||||||||||||||| targets:1394   ACGCGUAAGGGCUUGUUCGGUU   1415 Target Full Sequence	1.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|=|*||||||||||||||||| targets:1408   ACGCGUAAGGGCUUGUUCGGUU   1429 Target Full Sequence	1.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|=|*||||||||||||||||| targets:1408   ACGCGUAAGGGCUUGUUCGGUU   1429 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
AY106606.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*==||||||||||||||||| targets:416   CUUUUUAAGGGCUUGUUCGGUU   437 Target Full Sequence	2.0	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*==||||||||||||||||| targets:696   CUUUUUAAGGGCUUGUUCGGUU   717 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||||*|*||||||||||||||| targets:783   CCACAUUAGGGCUUGUUCGGUU   804 Target Full Sequence	2.0	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU963392.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*|=|=||||||||||||||| targets:1601   CUCCUUGAGGGCUUGUUCGGUU   1622 Target Full Sequence	2.0	Zea mays clone 261790 cytochrome P450 CYP71K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175832.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |=*|=|=||||||||||||||| targets:1601   CUCCUUGAGGGCUUGUUCGGUU   1622 Target Full Sequence	2.0	Zea mays putative cytochrome P450 superfamily protein (LOC100383167), mRNA	NA	coding protein	psRNATarget
EU955720.1	ncRNA:22   GGUG-GAUUCCCGAACAAGCCAA   1   ===|-=||||||||||||||||| targets:1972   UUGCAUUAAGGGCUUGUUCGGUU   1994 Target Full Sequence	3.0	Zea mays clone 1543287 kinetoplast-associated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154059.1	ncRNA:22   GGUG-GAUUCCCGAACAAGCCAA   1   ===|-=||||||||||||||||| targets:1972   UUGCAUUAAGGGCUUGUUCGGUU   1994 Target Full Sequence	3.0	Zea mays kinetoplast-associated protein (LOC100281140), mRNA	NA	coding protein	psRNATarget
BT040386.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *==|||*||||||||||||||| targets:814   AUGCCUUAGGGCUUGUUCGGUU   835 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0088H06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||=*|=||||||||||||||| targets:1029   ACAUAUGAGGGCUUGUUCGGUU   1050 Target Full Sequence	3.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||=*|=||||||||||||||| targets:1029   ACAUAUGAGGGCUUGUUCGGUU   1050 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:22   GGUGG--AUUCCCGAACAAGCCAA   1   ||-||--||||||||||||||||| targets:946   CC-CCAGUAAGGGCUUGUUCGGUU   968 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=||||||||*||||||||| targets:895   CCCUCUAAGGGCGUGUUCGGUU   916 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:22   GGUGG--AUUCCCGAACAAGCCAA   1   ||-||--||||||||||||||||| targets:984   CC-CCAGUAAGGGCUUGUUCGGUU   1006 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=||||||||*||||||||| targets:933   CCCUCUAAGGGCGUGUUCGGUU   954 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||=*|=||||||||||||||| targets:1320   ACAUAUGAGGGCUUGUUCGGUU   1341 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106534.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=||*||||||||||||||| targets:38   CCCUCUUAGGGCUUGUUCGGUU   59 Target Full Sequence	2.0	TSA: Zea mays contig42192, mRNA sequence	NA	coding protein	psRNATarget
EZ055872.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=*||||||||||||||||| targets:215   CCUUGUAAGGGCUUGUUCGGUU   236 Target Full Sequence	2.0	TSA: Zea mays contig56994, mRNA sequence	NA	coding protein	psRNATarget
EU972046.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =||*||*||||||||||||||| targets:685   UCAACUUAGGGCUUGUUCGGUU   706 Target Full Sequence	2.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|*|||*||||||||||||||| targets:739   UCUCCUCAGGGCUUGUUCGGUU   760 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU953075.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|*|||*||||||||||||||| targets:910   UCUCCUCAGGGCUUGUUCGGUU   931 Target Full Sequence	1.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
BT018247.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ====||*||||||||||||||| targets:362   UUGUCUUAGGGCUUGUUCGGUU   383 Target Full Sequence	2.0	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
EU965203.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|*|||*||||||||||||||| targets:790   UCUCCUCAGGGCUUGUUCGGUU   811 Target Full Sequence	1.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   =|*|||*||||||||||||||| targets:790   UCUCCUCAGGGCUUGUUCGGUU   811 Target Full Sequence	1.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=|||*|||||||||||||| targets:872   CCCUCUACGGGCUUGUUCGGUU   893 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*|*||||||||||||||| targets:1791   CCAUGUUAGGGCUUGUUCGGUU   1812 Target Full Sequence	3.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   |||=*|*||||||||||||||| targets:1857   CCAUGUUAGGGCUUGUUCGGUU   1878 Target Full Sequence	3.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   ||*=|||*|||||||||||||| targets:1664   CCCUCUACGGGCUUGUUCGGUU   1685 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968099.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   **|=*||||||||||||||||| targets:127   AAAUAUAAGGGCUUGUUCGGUU   148 Target Full Sequence	2.0	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960091.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   **|=*||||||||||||||||| targets:1068   GAAUAUAAGGGCUUGUUCGGUU   1089 Target Full Sequence	2.0	Zea mays clone 221636 mRNA sequence	NA	coding protein	psRNATarget
AY104367.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*||*||||||||||||||| targets:604   ACAACUCAGGGCUUGUUCGGUU   625 Target Full Sequence	2.0	Zea mays PCO134486 mRNA sequence	NA	coding protein	psRNATarget
AY111036.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|||||*|*||||||||||||| targets:77   ACACCUUAAGGCUUGUUCGGUU   98 Target Full Sequence	2.0	Zea mays CL1582_4 mRNA sequence	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*||*||||||||||||||| targets:671   ACAACUCAGGGCUUGUUCGGUU   692 Target Full Sequence	2.0	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*||*||||||||||||||| targets:671   ACAACUCAGGGCUUGUUCGGUU   692 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
AY109813.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|||||*||||||||||||*|| targets:1194   ACACCUUAGGGCUUGUUCGUUU   1215 Target Full Sequence	2.5	Zea mays CL4777_1 mRNA sequence	NA	coding protein	psRNATarget
EU963259.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *||*||*||||||||||||||| targets:914   ACAACUCAGGGCUUGUUCGGUU   935 Target Full Sequence	2.0	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
EU970241.1	ncRNA:22   GGUGGAUUCCCGAACAAGCCAA   1   *|||||*||||||||||||*|| targets:1026   ACACCUUAGGGCUUGUUCGUUU   1047 Target Full Sequence	2.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget