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BaseInfo

ncRNA ID	osa-miR812o-5p
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - CGUGUUCAACGUUUGACUGUC - NA
Stem-loop(if miRNA)	UC             C   C    A      ----UUUUUUUAU     UUUUUAUUAUUGUUAGAUGAUAAAACA GGUUUUCGUGU  AACGUUUGACUGU UAU UUAU UGAAAA             UAGUA                           U |||||||||||  ||||||||||||| ||| |||| ||||||             |||||                           G UCAAAGGCACA  UUGUAAACUGGCA GUA AAUA AUUUUU             UAAUU                           A            GA             A   A    A      UUAAUACUUUUUU     UUUCUAUUCAGUACGUAUUUCAUAAUA
Stem-loop sequence	GGUUUUCGUGUUCAACGUUUGACUGUCUAUCUUAUAUGAAAAUUUUUUUAUUAGUAUUUUUAUUAUUGUUAGAUGAUAAAACAUGAAUAAUACUUUAUGCAUGACUUAUCUUUUUAAUUUUUUUCAUAAUUUUUUUAAAUAAAAUGAACGGUCAAAUGUUAGACACGGAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827968.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:466   GACGGUCAAACGUUGGACACG   486 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
AK108746.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:1443   GACGGUCAAACGUUGGACACG   1463 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-150-E12, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:1250   GACGGUCAAACGUUGGACACG   1270 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
XM_015787694.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:1496   GACGGUCAAACGUUGGACACG   1516 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:1378   GACGGUCAAACGUUGGACACG   1398 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=|||||||||||=||||| targets:3076   GACGGUCAAACGUUGGACACG   3096 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   *||=||=|||||||||||||| targets:147   AACGGUUAAACGUUGAACACG   167 Target Full Sequence	2.0	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
HI403795.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   *||=||=|||||||||||||| targets:147   AACGGUUAAACGUUGAACACG   167 Target Full Sequence	2.0	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
JB164256.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   *||=||=|||||||||||||| targets:147   AACGGUUAAACGUUGAACACG   167 Target Full Sequence	2.0	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   *||=|||||||||||=||||| targets:57   AACGGUCAAACGUUGGACACG   77 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
XM_015794016.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||=*|||||||||||||||| targets:288   GACGAUCAAACGUUGAACACG   308 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281994 (LOC107281994), transcript variant X1, mRNA	uncharacterized LOC107281994(LOC107281994)	coding protein	psRNATarget
AK288606.1	ncRNA:21   CUGUCAGUUUGCAACUUGUGC   1   |||||||||||||||*||||* targets:2492   GACAGUCAAACGUUGUACACA   2512 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).