Search result

BaseInfo

ncRNA ID novel_zma_miR4008
Species Zea mays
Class miRNA
Genome position Chr2:738745-738833 [+]
Reference genome RefGen_v4
Source SRR2287159;SRR2287161;SRR2287164;SRR2287165;SRR2647386;SRR1618883;SRR2647389;SRR4237221;SRR4237222;SRR4237223;SRR4237224;SRR4237227;SRR5099742;SRR5105959;SRR5105961;SRR2089700
Length 21
Mature sequence(if miRNA) 1 - UCCAAAGGGAUCGCAUUGAUC - 21
Stem-loop(if miRNA) --           C          AU  -  -  C   --   C  
  UCCAAAGGGAU GCAUUGAUCU  UC UC AC UGC  CGC UGC
  ||||||||||| ||||||||||  || || || |||  ||| ||U
  AGGUUUCCCUA CGUGACUAGA  AG AG UG GCG  GCG ACG
UA           A          AC  C  C  A   UA   U  
Stem-loop sequence UCCAAAGGGAUCGCAUUGAUCUAUUCUCACCUGCCGCCUGCUGCAUGCGAUGCGAGUCGACGACAAGAUCAGUGCAAUCCCUUUGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235329.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2985353 NA coding protein psRNATarget
HI402916.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2074227 NA coding protein psRNATarget
LQ235046.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2985353 NA coding protein psRNATarget
JB163660.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2559767 NA coding protein psRNATarget
JB163377.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2559767 NA coding protein psRNATarget
HI403199.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2074227 NA coding protein psRNATarget
LQ235201.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2985353 NA coding protein psRNATarget
HI403071.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2074227 NA coding protein psRNATarget
JB163532.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2559767 NA coding protein psRNATarget
JB163820.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2559767 NA coding protein psRNATarget
LQ235489.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2985353 NA coding protein psRNATarget
HI403359.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2074227 NA coding protein psRNATarget
BT017377.1
ncRNA:19   AGUUACGCUAGGGAAACCU   1
  *||||||||||||||||||
targets:1   ACAAUGCGAUCCCUUUGGA   19

1.0 Zea mays clone EL01N0325G08.c mRNA sequence NA coding protein psRNATarget
NM_001143136.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:1862   ACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), mRNA NA coding protein psRNATarget
BT037254.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:1862   ACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays full-length cDNA clone ZM_BFb0160H24 mRNA, complete cds NA coding protein psRNATarget
XM_008663266.2
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:2196   ACACAAUGCGAUCCCUUUGGA   2216

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008663267.2
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:2193   ACACAAUGCGAUCCCUUUGGA   2213

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X2, mRNA NA coding protein psRNATarget
HI409977.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2074227 NA coding protein psRNATarget
LQ242107.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2985353 NA coding protein psRNATarget
JB170438.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2559767 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.