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BaseInfo

ncRNA ID	novel_zma_miR4007
Species	Zea mays
Class	miRNA
Genome position	Chr2:45577290-45577357 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - CGUCUUCGCACGGAUCGACCGGGU - 24
Stem-loop(if miRNA)	--    -     A      G  C    C  --      CGUC UUCGC CGGAUC AC GGGU GC  CGCU   |||| ||||| |||||| || |||| ||  |||C   GCAG AGGUG GCCUAG UG CUCG CG  GCGC CG    C     C      G  A    U  AA
Stem-loop sequence	CGUCUUCGCACGGAUCGACCGGGUCGCCGCUCCGCGAAGCUGCUCAGUGGAUCCGCGUGGACGACGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541263.1	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   |||||||||||||||||||||||| targets:54   ACCCGGUCGAUCCGUGCGAAGACG   77 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103632207 (LOC103632207), mRNA	NA	coding protein	psRNATarget
XM_008666563.2	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   |||||||||||||||||*|||||| targets:389   ACCCGGUCGAUCCGUGCAAAGACG   412 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643392 (LOC103643392), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664694.1	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   ||||||*||||||||||||||||| targets:272   ACCCGGCCGAUCCGUGCGAAGACG   295 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103641337 (LOC103641337), mRNA	NA	coding protein	psRNATarget
XM_008653921.2	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   ||||||*||||||||||||||||| targets:319   ACCCGGCCGAUCCGUGCGAAGACG   342 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632065 (LOC103632065), mRNA	NA	coding protein	psRNATarget
XM_020550304.1	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   ||||||*||||||||||||||||| targets:455   ACCCGGCCGAUCCGUGCGAAGACG   478 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109944836 (LOC109944836), mRNA	NA	coding protein	psRNATarget
XM_008675577.2	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   ||||*|*||||||||||||||||| targets:484   ACCCAGCCGAUCCGUGCGAAGACG   507 Target Full Sequence	1.0	PREDICTED: Zea mays glutathione S-transferase T2-like (LOC103649891), mRNA	NA	coding protein	psRNATarget
EU972237.1	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   =||--|||||*||||||||=|||| targets:197   GCC--GUCGAGCCGUGCGAGGACG   218 Target Full Sequence	2.5	Zea mays clone 378189 tubulin--tyrosine ligase-like protein 12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158331.1	ncRNA:24   UGGGCCAGCUAGGCACGCUUCUGC   1   =||--|||||*||||||||=|||| targets:197   GCC--GUCGAGCCGUGCGAGGACG   218 Target Full Sequence	2.5	Zea mays tubulin--tyrosine ligase-like protein 12 (LOC100285438), mRNA	NA	coding protein	psRNATarget