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BaseInfo

ncRNA ID	novel_zma_miR4005
Species	Zea mays
Class	miRNA
Genome position	Chr2:6288060-6288167 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287162;SRR2287164;SRR2287165;SRR1618883;SRR1743455;SRR4237222;SRR4237223;SRR4237224;SRR4237227;SRR5099742;SRR5105959;SRR5105961;SRR2089700
Length	20
Mature sequence(if miRNA)	1 - UGAAGUGUUUGGGGGAACUC - 20
Stem-loop(if miRNA)	--       U     C      G U       C     AGUUUAA    ACUG      C   GUUCUCC CAAAC ACUUCA U GCUGCAC UAGCU       UGGC    UGCUUG G   ||||||| ||||| |||||| | ||||||| |||||       ||||    ||||||   CAAGGGG GUUUG UGAAGU A CGAUGUG GUCGA       GCCG    GCGAAC U CU       -     -      G U       U     ------G    ----      G
Stem-loop sequence	GUUCUCCUCAAACCACUUCAGUUGCUGCACCUAGCUAGUUUAAUGGCACUGUGCUUGCGUGCAAGCGGCCGGAGCUGUGUGUAGCUAGUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF016305.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||=|||||||||||| targets:455   GAGUUCCUCCAAACACUUCA   474 Target Full Sequence	1.5	Zea mays ATP sulfurylase mRNA, complete cds	NA	coding protein	psRNATarget
EU973074.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||=|||||||||||| targets:418   GAGUUCCUCCAAACACUUCA   437 Target Full Sequence	1.5	Zea mays clone 392860 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301511.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||=|||||||||||| targets:426   GAGUUCCUCCAAACACUUCA   445 Target Full Sequence	1.5	Zea mays ATP-sulfurylase 3, chloroplastic-like (LOC103643994), mRNA	NA	coding protein	psRNATarget
BT063912.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||=|||||||||||| targets:426   GAGUUCCUCCAAACACUUCA   445 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0119G18 mRNA, complete cds	NA	coding protein	psRNATarget
AY109520.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||=|||||||||||| targets:455   GAGUUCCUCCAAACACUUCA   474 Target Full Sequence	1.5	Zea mays CL30_1 mRNA sequence	NA	coding protein	psRNATarget
NM_001309873.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||=|||||||||||||| targets:353   GAGUUUCCCCAAACACUUCA   372 Target Full Sequence	1.0	Zea mays Sulfate transporter 2.2 (gpm291), mRNA	NA	coding protein	psRNATarget
EU962135.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   *|*|||||||||||||||*| targets:759   AAUUUCCCCCAAACACUUGA   778 Target Full Sequence	2.5	Zea mays clone 240509 mRNA sequence	NA	coding protein	psRNATarget
XM_008667483.2	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   *|*|||||||||||||||*| targets:970   AAUUUCCCCCAAACACUUGA   989 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (cl35795_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035291.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   *|*|||||||||||||||*| targets:989   AAUUUCCCCCAAACACUUGA   1008 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053I16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001309888.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   *|*|||||||||||||||*| targets:1086   AAUUUCCCCCAAACACUUGA   1105 Target Full Sequence	2.5	Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (cl35795_1), mRNA	NA	coding protein	psRNATarget