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BaseInfo

ncRNA ID	novel_zma_miR4001
Species	Zea mays
Class	miRNA
Genome position	Chr2:22565290-22565442 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287162;SRR2287165
Length	21
Mature sequence(if miRNA)	133 - ACAUUUUAAAUCUGGGACAUC - 153
Stem-loop(if miRNA)	--                    C    CAG        A C  -CA C    G                  C UCCC   ACAUUUUAAAUCUGGGACAU CAUC   CAUCUAAC G AG   C AAUU UAUAAAGAACUCCUUCCA C    U   |||||||||||||||||||| ||||   |||||||| | ||   | |||| |||||||||||||||||| |   UGUAAAAUUUAGACUCUGUA GUAG   GUAGGUUG C UC   G UUAA AUGUUUUUUGAGGAGGGU G    C CG                    A    AAA        C A  CAA A    A                  A UACC
Stem-loop sequence	ACAUUUUAAAUCUGGGACAUCCAUCCAGCAUCUAACAGCAGCACCAAUUGUAUAAAGAACUCCUUCCACCUCCCUCCCAUGAUGGGAGGAGUUUUUUGUAAAAUUAGAACCUACCGUUGGAUGAAAGAUGAAUGUCUCAGAUUUAAAAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661794.2	ncRNA:21   CUACAGGGUCUAAAUUUUACA   1   |||||==|||||||||||||| targets:1052   GAUGUUUCAGAUUUAAAAUGU   1072 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:21   CUACAGGGUCUAAAUUUUACA   1   |||||==|||||||||||||| targets:1043   GAUGUUUCAGAUUUAAAAUGU   1063 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646380.2	ncRNA:21   CUACAGGGUCUAAAUUUUACA   1   *||||||=||||||||||||| targets:810   AAUGUCCUAGAUUUAAAAUGU   830 Target Full Sequence	1.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase UPL7 (LOC103625986), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537973.1	ncRNA:21   CUACAGGGUCUAAAUUUUACA   1   |||||=|||||||||||||*| targets:4   GAUGUUCCAGAUUUAAAAUAU   24 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM22-4-like (LOC109939669), mRNA	NA	coding protein	psRNATarget
XM_020553522.1	ncRNA:19   ACAGGGUCUAAAUUUUACA   1   |||=|=||||||||||||| targets:1   UGUUCUAGAUUUAAAAUGU   19 Target Full Sequence	2.0	PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645476.2	ncRNA:21   CUACAGGGUCUAAAUUUUACA   1   *|||**||||||||||||||| targets:899   AAUGCACCAGAUUUAAAAUGU   919 Target Full Sequence	2.0	PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA	NA	coding protein	psRNATarget