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BaseInfo

ncRNA ID novel_zma_miR4000
Species Zea mays
Class miRNA
Genome position Chr1:223021908-223021990 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - UUCCAAUCUCAUCCAAUUCAUGUG - 24
Stem-loop(if miRNA) --U        AG AG       -------   GUUUGAAUCCCA
   GUGGAUUG  U  GAUUGGA       UGG            A
   ||||||||  |  |||||||       |||
   UACUUAAC  A  CUAACCU       UUC            A
GUG        CU CU       UUUUUAA   UUCAAACUGAAC
Stem-loop sequence UGUGGAUUGAGUAGGAUUGGAUGGGUUUGAAUCCCAAACAAGUCAAACUUCUUAAUUUUUUCCAAUCUCAUCCAAUUCAUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU942657.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:175   CACAUGAAUUGGAUGAGAUUGGAA   198

0.0 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
EU949831.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:953   CACAUGAAUUGGAUGAGAUUGGAA   976

0.0 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:3420   CACAUGAAUUGGAUGAGAUUGGAA   3443

0.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:3406   CACAUGAAUUGGAUGAGAUUGGAA   3429

0.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:3688   CACAUGAAUUGGAUGAGAUUGGAA   3711

0.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||||||
targets:3693   CACAUGAAUUGGAUGAGAUUGGAA   3716

0.0 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||||||||||||||||
targets:682   CACAUGGAUUGGAUGAGAUUGGAA   705

1.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
BT069961.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||||||||||||||||
targets:47   CACAUGGAUUGGAUGAGAUUGGAA   70

1.0 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
HI405903.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4028 from Patent EP2074227 NA coding protein psRNATarget
JB166364.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4028 from Patent EP2559767 NA coding protein psRNATarget
HI405889.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
HI406849.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39

1.0 Sequence 4974 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405893.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
LQ238033.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4028 from Patent EP2985353 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
JB166354.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238979.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39

1.0 Sequence 4974 from Patent EP2985353 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
JB167310.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:16   CAUAUGGAUUGGAUGAGAUUGGAA   39

1.0 Sequence 4974 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:16   CACAUGGAUUGGAUGGGAUUGGAA   39

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403019.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1144 from Patent EP2074227 NA coding protein psRNATarget
HI403005.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
HI403090.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
LQ235149.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1144 from Patent EP2985353 NA coding protein psRNATarget
JB163480.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1144 from Patent EP2559767 NA coding protein psRNATarget
JB163466.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:35   CACAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
EU942557.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:504   CACAUGGAUUGGAUGGGAUUGGAA   527

2.5 Zea mays clone 1517970 mRNA sequence NA coding protein psRNATarget
BT062183.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:183   CAUAUGGAUUGGAUGAGAUUGGAA   206

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:811   CACAUGGAUUGGAUGGGAUUGGAA   834

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
AY103719.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:815   CACAUGGAUUGGAUGGGAUUGGAA   838

2.5 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
XM_008667120.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:885   CAUAUGGAUUGGAUGAGAUUGGAA   908

1.0 PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA NA coding protein psRNATarget
AY104167.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1417   CACAUGGAUUGGAUGGGAUUGGAA   1440

2.5 Zea mays PCO062696 mRNA sequence NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1403   CACAUGGAUUGGAUGGGAUUGGAA   1426

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1403   CACAUGGAUUGGAUGGGAUUGGAA   1426

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
BT088232.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1467   CACAUGGAUUGGAUGGGAUUGGAA   1490

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1467   CACAUGGAUUGGAUGGGAUUGGAA   1490

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
XM_008659614.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:122   CACAUGGAUUGGAUGGGAUUGGAA   145

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1752   CACAUGGAUUGGAUGGGAUUGGAA   1775

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1752   CACAUGGAUUGGAUGGGAUUGGAA   1775

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:1748   CAUAUGGAUUGGAUGAGAUUGGAA   1771

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:1764   CAUAUGGAUUGGAUGAGAUUGGAA   1787

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
EU957033.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:1335   CAUAUGGAUUGGAUGAGAUUGGAA   1358

1.0 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
EU957741.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||||||||||||
targets:1336   CAUAUGGAUUGGAUGAGAUUGGAA   1359

1.0 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:2437   CACAUGGAUUGGAUGGGAUUGGAA   2460

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:2737   CACAUGGAUUGGAUGGGAUUGGAA   2760

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:2841   CACAUGGAUUGGAUGGGAUUGGAA   2864

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1018   CACAUGGAUUGGAUGGGAUUGGAA   1041

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1136   CACAUGGAUUGGAUGGGAUUGGAA   1159

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674024.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:3824   CACAUGGAUUGGAUGGGAUUGGAA   3847

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674023.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:3838   CACAUGGAUUGGAUGGGAUUGGAA   3861

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674025.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:3956   CACAUGGAUUGGAUGGGAUUGGAA   3979

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008674021.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:3971   CACAUGGAUUGGAUGGGAUUGGAA   3994

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1136   CACAUGGAUUGGAUGGGAUUGGAA   1159

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:1166   CACAUGGAUUGGAUGGGAUUGGAA   1189

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:5741   CACAUGGAUUGGAUGGGAUUGGAA   5764

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008657579.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:7082   CACAUGGAUUGGAUGGGAUUGGAA   7105

2.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008657578.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:7186   CACAUGGAUUGGAUGGGAUUGGAA   7209

2.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542399.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||=||||||||
targets:7197   CACAUGGAUUGGAUGGGAUUGGAA   7220

2.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA NA coding protein psRNATarget
HI406824.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:14   CAUAUGGAUUGGAUGGGAUUGGAA   37

2.5 Sequence 4949 from Patent EP2074227 NA coding protein psRNATarget
JB167285.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:14   CAUAUGGAUUGGAUGGGAUUGGAA   37

2.5 Sequence 4949 from Patent EP2559767 NA coding protein psRNATarget
LQ238954.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:14   CAUAUGGAUUGGAUGGGAUUGGAA   37

2.5 Sequence 4949 from Patent EP2985353 NA coding protein psRNATarget
EZ107338.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:110   CAUAUGGAUUGGAUGGGAUUGGAA   133

2.5 TSA: Zea mays contig42996, mRNA sequence NA coding protein psRNATarget
HI403094.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:35   CAUAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:35   CAUAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:35   CAUAUGGAUUGGAUGGGAUUGGAA   58

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
EZ064093.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  |*||||||||||||||||||||||
targets:125   CCCAUGAAUUGGAUGAGAUUGGAA   148

0.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
XM_020553062.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:833   CAUAUGGAUUGGAUGGGAUUGGAA   856

2.5 PREDICTED: Zea mays CASP-like protein 12 (LOC100193285), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138428.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:884   CAUAUGGAUUGGAUGGGAUUGGAA   907

2.5 Zea mays CASP-like protein 12 (LOC100193285), mRNA NA coding protein psRNATarget
BT036499.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:978   CAUAUGGAUUGGAUGGGAUUGGAA   1001

2.5 Zea mays full-length cDNA clone ZM_BFb0119B07 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:113   CAUAUGGAUUGGAUGGGAUUGGAA   136

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
EU974225.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:1113   CAUAUGGAUUGGAUGGGAUUGGAA   1136

2.5 Zea mays clone 443257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001176906.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:196   CAUAUGGAUUGGAUGGGAUUGGAA   219

2.5 Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA NA coding protein psRNATarget
BT069908.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||=||||||||
targets:196   CAUAUGGAUUGGAUGGGAUUGGAA   219

2.5 Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds NA coding protein psRNATarget
BT061560.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||||||||||||||||||||
targets:1378   UACCUAUGAAUUGGAUGAGAUUGGAA   1403

0.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||||||||||||||||||||
targets:1378   UACCUAUGAAUUGGAUGAGAUUGGAA   1403

0.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
HI409215.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7340 from Patent EP2074227 NA coding protein psRNATarget
LQ241345.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7340 from Patent EP2985353 NA coding protein psRNATarget
HI409272.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
JB169733.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
JB169676.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:11   CAUGUGGAUUGGAUGGGAUUGGAA   34

2.5 Sequence 7340 from Patent EP2559767 NA coding protein psRNATarget
EZ101233.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=||||||||||||*||||||||
targets:63   CAUAUGAAUUGGAUGUGAUUGGAA   86

1.5 TSA: Zea mays contig36889, mRNA sequence NA coding protein psRNATarget
HI405841.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||*||||||||||||
targets:26   CACAUGGAUUGAAUGAGAUUGGAA   49

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||*||||||||||||
targets:26   CACAUGGAUUGAAUGAGAUUGGAA   49

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||*||||||||||||
targets:26   CACAUGGAUUGAAUGAGAUUGGAA   49

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||||||||*||
targets:26   CACAUGGAUUGGAUGAGAUUGAAA   49

2.5 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
JB166339.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||||||||*||
targets:26   CACAUGGAUUGGAUGAGAUUGAAA   49

2.5 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||||||||*||
targets:26   CACAUGGAUUGGAUGAGAUUGAAA   49

2.5 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
EZ055500.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||*||||||||
targets:86   CACAUGGAUUGGAUGUGAUUGGAA   109

2.5 TSA: Zea mays contig56622, mRNA sequence NA coding protein psRNATarget
XM_008674362.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:498   CACAUGGAUUAGAUGAGAUUGGAA   521

2.0 PREDICTED: Zea mays Membrane magnesium transporter (LOC100276290), transcript variant X1, mRNA NA coding protein psRNATarget
EU975230.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:503   CACAUGGAUUAGAUGAGAUUGGAA   526

2.0 Zea mays clone 485079 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU973494.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:515   CACAUGGAUUAGAUGAGAUUGGAA   538

2.0 Zea mays clone 399694 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001291558.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:639   CACAUGGAUUAGAUGAGAUUGGAA   662

2.0 Zea mays Membrane magnesium transporter (LOC100276290), mRNA NA coding protein psRNATarget
EU964394.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:640   CACAUGGAUUAGAUGAGAUUGGAA   663

2.0 Zea mays clone 278539 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU976922.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=|||*|||||||||||||
targets:676   CACAUGGAUUAGAUGAGAUUGGAA   699

2.0 Zea mays clone 993749 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT040160.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||=||||||||
targets:976   CAUGUGGAUUGGAUGGGAUUGGAA   999

2.5 Zea mays full-length cDNA clone ZM_BFc0068H20 mRNA, complete cds NA coding protein psRNATarget
XM_008658927.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||||||||||||*||
targets:238   CACAUGGAUUGGAUGAGAUUGAAA   261

2.5 PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA NA coding protein psRNATarget
BT069115.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||=||||*||||||||||||
targets:464   CACAUGGAUUGAAUGAGAUUGGAA   487

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
XM_008651597.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||*||=
targets:3249   CACAUGAAUUGGAUGAGAUUAGAG   3272

2.5 PREDICTED: Zea mays probable calcium-transporting ATPase 6, plasma membrane-type (LOC103630548), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651599.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||*||=
targets:3895   CACAUGAAUUGGAUGAGAUUAGAG   3918

2.5 PREDICTED: Zea mays probable calcium-transporting ATPase 6, plasma membrane-type (LOC103630548), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008651598.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||||||||||||||||||||*||=
targets:3919   CACAUGAAUUGGAUGAGAUUAGAG   3942

2.5 PREDICTED: Zea mays probable calcium-transporting ATPase 6, plasma membrane-type (LOC103630548), transcript variant X2, mRNA NA coding protein psRNATarget
BT086633.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=|||||||||||||||||
targets:390   UACCUAUGGAUUGGAUGAGAUUGGAA   415

1.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT063416.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=|||||||||||||||||
targets:2015   UACCUAUGGAUUGGAUGAGAUUGGAA   2040

1.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=|||||||||||||||||
targets:2216   UACCUAUGGAUUGGAUGAGAUUGGAA   2241

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=|||||||||||||||||
targets:2223   UACCUAUGGAUUGGAUGAGAUUGGAA   2248

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=|||||||||||||||||
targets:2283   UACCUAUGGAUUGGAUGAGAUUGGAA   2308

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001153735.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||*|||||||||
targets:839   CAUAUGGAUUGGAUAAGAUUGGAA   862

2.5 Zea mays glutathione S-transferase GSTU6 (LOC100280815), mRNA NA coding protein psRNATarget
EU953961.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=|||||||*|||||||||
targets:839   CAUAUGGAUUGGAUAAGAUUGGAA   862

2.5 Zea mays clone 1450424 glutathione S-transferase GSTU6 mRNA, complete cds NA coding protein psRNATarget
NM_001112112.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1726   UACAUGGAUUGGACGAGAUUGGAA   1749

2.5 Zea mays nitrilase 1 (NIT1), transcript variant 1, mRNA NA coding protein psRNATarget
AY156979.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1734   UACAUGGAUUGGACGAGAUUGGAA   1757

2.5 Zea mays nitrilase 1 (NIT1) mRNA, complete cds NA coding protein psRNATarget
XM_008646066.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1767   UACAUGGAUUGGACGAGAUUGGAA   1790

2.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020537588.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1786   UACAUGGAUUGGACGAGAUUGGAA   1809

2.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008646063.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1804   UACAUGGAUUGGACGAGAUUGGAA   1827

2.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008646064.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1835   UACAUGGAUUGGACGAGAUUGGAA   1858

2.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537587.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|||||=||||||*||||||||||
targets:1853   UACAUGGAUUGGACGAGAUUGGAA   1876

2.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||||||||*||
targets:3331   CAUAUGGAUUGGAUGAGAUUGAAA   3354

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||||||||*||
targets:3344   CAUAUGGAUUGGAUGAGAUUGAAA   3367

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||=|||=||||||||||||||*||
targets:3375   CAUAUGGAUUGGAUGAGAUUGAAA   3398

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=||||||||=||||||||
targets:2087   UACCUAUGGAUUGGAUGGGAUUGGAA   2112

2.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   GUG--UACUUAACCUACUCUAACCUU   1
  =||--|||=||||||||=||||||||
targets:2088   UACCUAUGGAUUGGAUGGGAUUGGAA   2113

2.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
EZ108499.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  =|=||*=|||||||||||||||||
targets:708   UAUAUAGAUUGGAUGAGAUUGGAA   731

2.0 TSA: Zea mays contig44158, mRNA sequence NA coding protein psRNATarget
XM_020538633.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:3890   CAUGUGGAUUAGAUGAGAUUGGAA   3913

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008647808.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:4003   CAUGUGGAUUAGAUGAGAUUGGAA   4026

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538630.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:4042   CAUGUGGAUUAGAUGAGAUUGGAA   4065

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008648200.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||*||||||||
targets:4269   CAUGUGGAUUGGAUGUGAUUGGAA   4292

2.5 PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008648199.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||*||||||||
targets:4274   CAUGUGGAUUGGAUGUGAUUGGAA   4297

2.5 PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008648198.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||*||||||||
targets:4366   CAUGUGGAUUGGAUGUGAUUGGAA   4389

2.5 PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648197.2
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=||||||||*||||||||
targets:4370   CAUGUGGAUUGGAUGUGAUUGGAA   4393

2.5 PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020538631.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:4790   CAUGUGGAUUAGAUGAGAUUGGAA   4813

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538632.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:4791   CAUGUGGAUUAGAUGAGAUUGGAA   4814

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001350089.1
ncRNA:24   GUGUACUUAACCUACUCUAACCUU   1
  ||==||=|||*|||||||||||||
targets:5853   CAUGUGGAUUAGAUGAGAUUGGAA   5876

2.0 Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA NA coding protein psRNATarget
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