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BaseInfo

ncRNA ID	osa-miR812o-3p
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	24
Mature sequence(if miRNA)	NA - GAACGGUCAAAUGUUAGACACGGA - NA
Stem-loop(if miRNA)	UC             C   C    A      ----UUUUUUUAU     UUUUUAUUAUUGUUAGAUGAUAAAACA GGUUUUCGUGU  AACGUUUGACUGU UAU UUAU UGAAAA             UAGUA                           U |||||||||||  ||||||||||||| ||| |||| ||||||             |||||                           G UCAAAGGCACA  UUGUAAACUGGCA GUA AAUA AUUUUU             UAAUU                           A            GA             A   A    A      UUAAUACUUUUUU     UUUCUAUUCAGUACGUAUUUCAUAAUA
Stem-loop sequence	GGUUUUCGUGUUCAACGUUUGACUGUCUAUCUUAUAUGAAAAUUUUUUUAUUAGUAUUUUUAUUAUUGUUAGAUGAUAAAACAUGAAUAAUACUUUAUGCAUGACUUAUCUUUUUAAUUUUUUUCAUAAUUUUUUUAAAUAAAAUGAACGGUCAAAUGUUAGACACGGAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064197.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=||||||||||=||||||||||| targets:891   UUCGUGUCUAACGUUUGACCGUUC   914 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |||*||||||||||||||||||*| targets:1676   UCCAUGUCUAACAUUUGACCGUCC   1699 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |||*||||||||||||||||||*| targets:1676   UCCAUGUCUAACAUUUGACCGUCC   1699 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   ||||||||*|||||||||||||*| targets:667   UCCGUGUCCAACAUUUGACCGUCC   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   ||||||||*|||||||||||||*| targets:654   UCCGUGUCCAACAUUUGACCGUCC   677 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
XM_015779567.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*||||||||||||||| targets:1941   UUCAUGUCCAACAUUUGACCGUUC   1964 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group beta-fructofuranosidase, insoluble isoenzyme 3 (LOC4335789), mRNA	beta-fructofuranosidase, insoluble isoenzyme 3(LOC4335789)	coding protein	psRNATarget
AK120779.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*||||||||||||||| targets:1948   UUCAUGUCCAACAUUUGACCGUUC   1971 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023009M11, full insert sequence	NA	coding protein	psRNATarget
XM_015768707.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*|||=||||||||||| targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768705.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*|||=||||||||||| targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768708.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*|||=||||||||||| targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768706.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|*||||*|||=||||||||||| targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
AK288670.1	ncRNA:24   AGGCACAGAUUGUAAACUGGCAAG   1   |=|**||=||||=||||||||||| targets:929   UUCACGUUUAACGUUUGACCGUUC   952 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090058O04, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).