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BaseInfo

ncRNA ID	novel_zma_miR3994
Species	Zea mays
Class	miRNA
Genome position	Chr10:30976969-30977050 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287161;SRR2287162;SRR1997865;SRR5105959;SRR5451005;SRR5451006;SRR1997866
Length	24
Mature sequence(if miRNA)	59 - UGAAGUGGAUUGAGGUGUAUUGAA - 82
Stem-loop(if miRNA)	--   A    AU  A          AA GACUGAAAGGGAA   UGA GUGG  UG GGUGUAUUGA  G             A   ||| ||||  || ||||||||||  |             U   ACU CACC  AC CCACAUAACU  C             U UA   C    AU  C          -U ACAUUGUACUUGA
Stem-loop sequence	UGAAGUGGAUUGAGGUGUAUUGAAAGGACUGAAAGGGAAAUUAGUUCAUGUUACACUUCAAUACACCCCAUACCACCUCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942361.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *||||||||==||||||||||||| targets:501   CUCAAUACAUUUCAAUCCACUUCA   524 Target Full Sequence	2.0	Zea mays clone 1487121 mRNA sequence	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   **|||||||=|||||||||||||| targets:1328   CCCAAUACAUCUCAAUCCACUUCA   1351 Target Full Sequence	1.0	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   AAG---UUAUGUGGAGUUAGGUGAAGU   1   *||---||||||||||||||||||||| targets:5042   CUCUAAAAUACACCUCAAUCCACUUCA   5068 Target Full Sequence	0.0	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   **|||||||=||=||||||||||| targets:706   CACAAUACAUCUUAAUCCACUUCA   729 Target Full Sequence	2.5	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
LQ238258.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   **=||||||=|||||||||||||| targets:70   CCUAAUACAUCUCAAUCCACUUCA   93 Target Full Sequence	1.0	Sequence 4253 from Patent EP2985353	NA	coding protein	psRNATarget
HI406128.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   **=||||||=|||||||||||||| targets:70   CCUAAUACAUCUCAAUCCACUUCA   93 Target Full Sequence	1.0	Sequence 4253 from Patent EP2074227	NA	coding protein	psRNATarget
JB166589.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   **=||||||=|||||||||||||| targets:70   CCUAAUACAUCUCAAUCCACUUCA   93 Target Full Sequence	1.0	Sequence 4253 from Patent EP2559767	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *||||||||=|||||||||||*|| targets:1943   CUCAAUACAUCUCAAUCCACUCCA   1966 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *||||||||=|||||||||||*|| targets:1943   CUCAAUACAUCUCAAUCCACUCCA   1966 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *||||||||=|||||||||||*|| targets:1762   CUCAAUACAUCUCAAUCCACUCCA   1785 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *||||||||=|||||||||||*|| targets:346   CUCAAUACAUCUCAAUCCACUCCA   369 Target Full Sequence	2.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**|||||||=||||||||||||| targets:1075   UAAAAUACACUUCAAUCCACUUCA   1098 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
EU950098.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**||||||=|||||||||||||| targets:769   UAAAAUACAUCUCAAUCCACUUCA   792 Target Full Sequence	1.0	Zea mays clone 461257 mRNA sequence	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**|||||||=||||||||||||| targets:727   UAAAAUACACUUCAAUCCACUUCA   750 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
LQ238980.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**||||||=|||||||||||||| targets:69   UAAAAUACAUCUCAAUCCACUUCA   92 Target Full Sequence	1.0	Sequence 4975 from Patent EP2985353	NA	coding protein	psRNATarget
JB167311.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**||||||=|||||||||||||| targets:69   UAAAAUACAUCUCAAUCCACUUCA   92 Target Full Sequence	1.0	Sequence 4975 from Patent EP2559767	NA	coding protein	psRNATarget
HI406850.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   |**||||||=|||||||||||||| targets:69   UAAAAUACAUCUCAAUCCACUUCA   92 Target Full Sequence	1.0	Sequence 4975 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   AAGUUAUGUGGAGUUAGGUGAAGU   1   *|=||||||=|||||||||||*|| targets:1424   CUUAAUACAUCUCAAUCCACUCCA   1447 Target Full Sequence	2.5	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   AAGUUA--UGUGGAGUUAGGUGAAGU   1   **=|||--|||||||||||||||||| targets:54   ACUAAUUUACACCUCAAUCCACUUCA   79 Target Full Sequence	2.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   AAGUUA--UGUGGAGUUAGGUGAAGU   1   **=|||--|||||||||||||||||| targets:54   ACUAAUUUACACCUCAAUCCACUUCA   79 Target Full Sequence	2.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   AAGUUA--UGUGGAGUUAGGUGAAGU   1   **=|||--|||||||||||||||||| targets:54   ACUAAUUUACACCUCAAUCCACUUCA   79 Target Full Sequence	2.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget