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BaseInfo

ncRNA ID	novel_zma_miR3991
Species	Zea mays
Class	miRNA
Genome position	Chr2:63971027-63971120 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287162
Length	24
Mature sequence(if miRNA)	71 - AUCCAUGGAUUGGAUGAGAUUGGA - 94
Stem-loop(if miRNA)	--     --       GA  A      AAAAUA    UAAAA  UUUGA   AUCCA  UGGAUUG  UG GAUUGG      UUUA     AC     C   |||||  |||||||  || ||||||      ||||     ||   UAGGU  ACCUAAC  AC CUAACC      AAAU     UG     U GU     AC       UC  C      -CACCC    -UUAG  UUCGU
Stem-loop sequence	AUCCAUGGAUUGGAUGAGAUUGGAAAAUAUUUAUAAAAACUUUGACUUGCUUGUGAUUUAAACCCACCCAAUCCCACUCAAUCCACAUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066004.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   ||||||||||||||||||||||=| targets:46   UCCAAUCUCAUCCAAUCCAUGGGU   69 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0144M24 mRNA, complete cds	NA	coding protein	psRNATarget
HI405925.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99 Target Full Sequence	2.5	Sequence 4050 from Patent EP2074227	NA	coding protein	psRNATarget
JB166386.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99 Target Full Sequence	2.5	Sequence 4050 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238055.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99 Target Full Sequence	2.5	Sequence 4050 from Patent EP2985353	NA	coding protein	psRNATarget
HI403293.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101 Target Full Sequence	2.5	Sequence 1418 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235423.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101 Target Full Sequence	2.5	Sequence 1418 from Patent EP2985353	NA	coding protein	psRNATarget
JB163754.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||*||||||||||||||=| targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101 Target Full Sequence	2.5	Sequence 1418 from Patent EP2559767	NA	coding protein	psRNATarget
EZ107685.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUACCUA   1   |||||||||||||||||||||*|* targets:91   UCCAAUCUCAUCCAAUCCAUGUAC   114 Target Full Sequence	2.5	TSA: Zea mays contig43343, mRNA sequence	NA	coding protein	psRNATarget