Search result

BaseInfo

ncRNA ID	osa-miR812l
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	24
Mature sequence(if miRNA)	NA - ACGAACGGUUAAAGUUGGACGCGG - NA
Stem-loop(if miRNA)	A     UA      UA                          --UA   U    GUAAUUAAUAUUUUUGUUGUUAUAAGAUGAUAAAACAU AGUACUUCCUCCGUCCUAUUUUAAGUGCA CCAUA  UUUUCG  UUCAAUUUUGAUCGUUCGUCUUAUUU    AUU UUUU                                      G ||||||||||||||||||||||||||||| |||||  ||||||  ||||||||||||||||||||||||||    ||| ||||                                      C UUAUGAGGGAGGUAGGGUGAAAUUCACGU GGUAU  AAAGGC  AGGUUGAAAUUGGCAAGCAGAAUAAA    UUU AAAA                                      A                              A     UA      GC                          UUUU   -    UCUUUUUUAAAUUUUGUAUUCAGUGCGCAUUUUAUGAU
Stem-loop sequence	AGUACUUCCUCCGUCCUAUUUUAAGUGCAACCAUAUAUUUUCGUAUUCAAUUUUGAUCGUUCGUCUUAUUUUAAUUUUUUUGUAAUUAAUAUUUUUGUUGUUAUAAGAUGAUAAAACAUGCAUAGUAUUUUACGCGUGACUUAUGUUUUAAAUUUUUUCUAAAAUUUUUUUAAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAAUUAUGGAUGCACUUAAAGUGGGAUGGAGGGAGUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403792.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||||||||||||||||||=|| targets:21   CCGCGUCCAACUUUAACCGUUUGU   44 Target Full Sequence	1.5	Sequence 1917 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235922.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||||||||||||||||||=|| targets:21   CCGCGUCCAACUUUAACCGUUUGU   44 Target Full Sequence	1.5	Sequence 1917 from Patent EP2985353	NA	coding protein	psRNATarget
JB164253.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||||||||||||||||||=|| targets:21   CCGCGUCCAACUUUAACCGUUUGU   44 Target Full Sequence	1.5	Sequence 1917 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015779734.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   ||*||||||||||||||||||||| targets:2353   CCACGUCCAACUUUAACCGUUCGU   2376 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group subtilisin-like protease SBT1.7 (LOC4336642), mRNA	subtilisin-like protease SBT1.7(LOC4336642)	coding protein	psRNATarget
XM_015779276.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||*|=||=||||||||||||| targets:1451   CCGCGCCUAAUUUUAACCGUUCGU   1474 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779283.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||*|=||=||||||||||||| targets:1444   CCGCGCCUAAUUUUAACCGUUCGU   1467 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779289.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   |||||*|=||=||||||||||||| targets:1253   CCGCGCCUAAUUUUAACCGUUCGU   1276 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
AK108653.1	ncRNA:24   GGCGCAGGUUGAAAUUGGCAAGCA   1   =|||||||||=|||||||||*||| targets:296   UCGCGUCCAAUUUUAACCGUCCGU   319 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-148-C11, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).