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BaseInfo

ncRNA ID novel_zma_miR3985
Species Zea mays
Class miRNA
Genome position Chr2:205970993-205971072 [-]
Reference genome RefGen_v4
Source SRR2287159;SRR2287161;SRR2287163;SRR2287164
Length 21
Mature sequence(if miRNA) 60 - AAAUAUCAUUUUAGGACUACA - 80
Stem-loop(if miRNA) --            A   C             AAA   GCU
  AAAUAUCAUUUU GGA UACAAAUAAGCUA   UAA   A
  |||||||||||| ||| |||||||||||||   |||
  UUUAUAGUGAAA CCU GUGUUUAUUCGAU   GUU   C
AU            C   A             --G   ACC
Stem-loop sequence AAAUAUCAUUUUAGGACUACAAAUAAGCUAAAAUAAGCUACCCAUUGGUAGCUUAUUUGUGAUCCCAAAGUGAUAUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT036602.1
ncRNA:21   ACAUCAGGAUUUUACUAUAAA   1
  |*||||=|||||=||||||||
targets:1041   UAUAGUUCUAAAGUGAUAUUU   1061

2.5 Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds NA coding protein psRNATarget
NM_001139196.1
ncRNA:21   ACAUCAGGAUUUUACUAUAAA   1
  |*||||=|||||=||||||||
targets:1041   UAUAGUUCUAAAGUGAUAUUU   1061

2.5 Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA NA coding protein psRNATarget