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BaseInfo

ncRNA ID novel_zma_miR3984
Species Zea mays
Class miRNA
Genome position Chr2:216126243-216126373 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 24
Mature sequence(if miRNA) 108 - AGGGCUUGUUUAGGAUAAAAGGUA - 131
Stem-loop(if miRNA) --           A    A             -   A    AG A          C          A
  AGGGCUUGUUU GGAU AAAGGUAAUGAAG AGA UUAA  G GUUAGAAUUU UCGCUAUUUA G
  ||||||||||| |||| ||||||||||||| ||| ||||  | |||||||||| ||||||||||
  UCCCGAACAAA CCUA UUUCCAUUAUUUC UCU AAUU  C CGAUCUUAGA AGUGAUGAGU A
AU           C    G             A   -    CU -          A          U
Stem-loop sequence AGGGCUUGUUUAGGAUAAAAGGUAAUGAAGAGAAUUAAAGGAGUUAGAAUUUCUCGCUAUUUAAGAUUGAGUAGUGAAAGAUUCUAGCCUCUUAAUCUACUUUAUUACCUUUGAUCCCAAACAAGCCCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001150586.2
ncRNA:21   GAAAAUAGGAUUUGUUCGGGA   1
  ||||*||||*|||||||||||
targets:1   CUUUGAUCCCAAACAAGCCCU   21

2.5 Zea mays uncharacterized LOC100276883 (LOC100276883), mRNA NA coding protein psRNATarget