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BaseInfo

ncRNA ID	novel_zma_miR3982
Species	Zea mays
Class	miRNA
Genome position	Chr2:242027806-242027940 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287161;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - AGAGACGUUAGAUCUAAGAUGGAU - 24
Stem-loop(if miRNA)	--               G       G   U   A    U    CG  G      C    A  UGGUG   UCAUCUUAGAUCUAA GUCUCUA UUG UUG UGUA UUUG  AA GACACC UCCG CG     G   ||||||||||||||| ||||||| ||| ||| |||| ||||  || |||||| |||| ||     G   GGUAGAAUCUAGAUU CAGAGAU AAC AGU ACGU AAAU  UU UUGUGG AGGU GU     G UA               G       G   U   A    U    AU  A      A    G  GAUGU
Stem-loop sequence	UCAUCUUAGAUCUAAGGUCUCUAGUUGUUUGAUGUAUUUUGCGAAGGACACCCUCCGACGUGGUGGGGUGUAGUGGUGGAAGGUGUUAUUUAUAAAUUGCAAUGAUCAAGUAGAGACGUUAGAUCUAAGAUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238120.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   ||==||=||||||=|||||||||| targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57 Target Full Sequence	2.5	Sequence 4115 from Patent EP2985353	NA	coding protein	psRNATarget
JB166451.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   ||==||=||||||=|||||||||| targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57 Target Full Sequence	2.5	Sequence 4115 from Patent EP2559767	NA	coding protein	psRNATarget
HI405990.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   ||==||=||||||=|||||||||| targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57 Target Full Sequence	2.5	Sequence 4115 from Patent EP2074227	NA	coding protein	psRNATarget
BT061436.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   ||==||=||||||=|||||||||| targets:176   AUUUAUUUUAGAUUUAACGUCUCU   199 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	1.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||||||||| targets:342   ACUCAUUUUAGAUCUAACGUCUCU   365 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*==|||||||||||||||||||| targets:680   ACUUAUCUUAGAUCUAACGUCUCU   703 Target Full Sequence	0.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||=|||||| targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39 Target Full Sequence	2.5	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
JB163845.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||=|||||| targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39 Target Full Sequence	2.5	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
HI403384.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=||||||||||=|||||| targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39 Target Full Sequence	2.5	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
JB163743.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAGA   1   |||------|||=|||||||||||||||=| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	2.5	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
HI403282.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAGA   1   |||------|||=|||||||||||||||=| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	2.5	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAGA   1   |||------|||=|||||||||||||||=| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	2.5	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
HI409543.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||=||| targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43 Target Full Sequence	2.5	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
JB170004.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||=||| targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43 Target Full Sequence	2.5	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||=||| targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43 Target Full Sequence	2.5	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||||=| targets:905   ACUCAUUUUAGAUCUAACGUCUUU   928 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||||=| targets:870   ACUCAUUUUAGAUCUAACGUCUUU   893 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||||=| targets:1050   ACUCAUUUUAGAUCUAACGUCUUU   1073 Target Full Sequence	2.5	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||||=| targets:2018   ACUCAUUUUAGAUCUAACGUCUUU   2041 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*=|||=|||||||||||||||=| targets:2027   ACUCAUUUUAGAUCUAACGUCUUU   2050 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*==||=||||||=|||||||||| targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*==||=||||||=|||||||||| targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*==||=||||||=|||||||||| targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
BT016456.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAGA   1   |*||*|||||||||||||||||=| targets:45   ACCCUUCUUAGAUCUAACGUCUUU   68 Target Full Sequence	1.5	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
XM_008654898.2	ncRNA:24   UAG---GUAGAAUCUAGAUUGCAGAGA   1   |||---|||=|||||||||||*||||| targets:2   AUCACUCAUUUUAGAUCUAACAUCUCU   28 Target Full Sequence	2.5	PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA	NA	coding protein	psRNATarget
JB163658.1	ncRNA:24   UAG---GUAGAAUCUAGAUUGCAGAGA   1   |||---=||=|||*||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235327.1	ncRNA:24   UAG---GUAGAAUCUAGAUUGCAGAGA   1   |||---=||=|||*||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget
HI403197.1	ncRNA:24   UAG---GUAGAAUCUAGAUUGCAGAGA   1   |||---=||=|||*||||||||||||| targets:13   AUCACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
EU948462.1	ncRNA:24   UA--GGUAGAAUCUAGAUUGCAGAGA   1   ||--==||=|||||||||||||||*| targets:437   AUACUUAUUUUAGAUCUAACGUCUAU   462 Target Full Sequence	2.5	Zea mays clone 377988 mRNA sequence	NA	coding protein	psRNATarget