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BaseInfo

ncRNA ID	novel_zma_miR3978
Species	Zea mays
Class	miRNA
Genome position	Chr2:210712451-210712567 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - GUGUUCCAUGGCAUCGCACGGGCA - 24
Stem-loop(if miRNA)	G  -    A     U          CC        CUAGAUUAUG     C        G  C  UG UUCC UGGCA CGCACGGGCA  UACCUAGU          AUAAU UAUAAGUA CU A  || |||| ||||| ||||||||||  ||||||||          ||||| |||||||| ||  AC GAGG AUCGU GCGUGCCCGU  GUGGAUCA          UAUUA AUAUUCGU GA U A  U    C     U          AU        ----------     U        A  U
Stem-loop sequence	GUGUUCCAUGGCAUCGCACGGGCACCUACCUAGUCUAGAUUAUGAUAAUCUAUAAGUAGCUCAUUAGAUGCUUAUAUAUUAUACUAGGUGUAUGCCCGUGCGUUGCUACGGAGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961706.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   **=|||||||||||||*||||||= targets:790   AAUCCGUGCGAUGCCACGGAACAU   813 Target Full Sequence	2.5	Zea mays clone 237741 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150187.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   **=|||||||||||||*||||||= targets:790   AAUCCGUGCGAUGCCACGGAACAU   813 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276382 (LOC100276382), mRNA	NA	coding protein	psRNATarget
BT063350.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   **=|||||||||||||*||||||= targets:948   AAUCCGUGCGAUGCCACGGAACAU   971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0055K11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652984.2	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   **=|||||||||||||*||||||= targets:942   AAUCCGUGCGAUGCCACGGAACAU   965 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276382 (LOC100276382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU952758.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|=|*||||||*|||||||||||| targets:148   AGUCAGUGCGAGGCCAUGGAACAC   171 Target Full Sequence	1.5	Zea mays clone 1288143 mRNA sequence	NA	coding protein	psRNATarget
BT040308.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|=|*||||||*|||||||||||| targets:135   AGUCAGUGCGAGGCCAUGGAACAC   158 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0080G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174782.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|=|*||||||*|||||||||||| targets:132   AGUCAGUGCGAGGCCAUGGAACAC   155 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382016 (LOC100382016), mRNA	NA	coding protein	psRNATarget
BT062902.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|=|*||||||*|||||||||||| targets:132   AGUCAGUGCGAGGCCAUGGAACAC   155 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0005N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671429.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|==|*||||*||||||||||||| targets:818   AGUUCCUGCGCUGCCAUGGAACAC   841 Target Full Sequence	2.0	PREDICTED: Zea mays putative inorganic phosphate transporter 1-13 (LOC103646747), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549308.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|==|*||||*||||||||||||| targets:830   AGUUCCUGCGCUGCCAUGGAACAC   853 Target Full Sequence	2.0	PREDICTED: Zea mays putative inorganic phosphate transporter 1-13 (LOC103646747), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JQ178246.1	ncRNA:24   ACGGGCACGCUACGGUACCUUGUG   1   *|==|*||||*||||||||||||| targets:791   AGUUCCUGCGCUGCCAUGGAACAC   814 Target Full Sequence	2.0	UNVERIFIED: Zea mays major facilitator superfamily protein-like (Pht1;10) mRNA, complete sequence	NA	coding protein	psRNATarget