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BaseInfo

ncRNA ID	novel_zma_miR3976
Species	Zea mays
Class	miRNA
Genome position	Chr2:197006220-197006303 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	23
Mature sequence(if miRNA)	1 - CAGAAGGGGAUUGGAGGGGAUUA - 23
Stem-loop(if miRNA)	--                                   G   A   CAGAAGGGGAUUGGAGGGGAUUAAAUCCCCUCCUA UCA A   ||||||||||||||||||||||||||||||||||| |||   GUUUUCCCCUAACCUCCCCUAAUUUAGGGGAGGAU AGU A AU                                   A   A
Stem-loop sequence	CAGAAGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUGAAUAGGAGGGGAUUUAAUCCCCUCCAAUCCCCUUUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968801.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||||=|||||=||||||||||| targets:526   UAAUCUCCUCCGAUCCCCUUCUG   548 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||||=|||||=||||||||||| targets:526   UAAUCUCCUCCGAUCCCCUUCUG   548 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||=|||=|||||||||||| targets:4795   UAAACCUCUCUAAUCCCCUUCUG   4817 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||=|||=|||||||||||| targets:5022   UAAACCUCUCUAAUCCCCUUCUG   5044 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||||||*|||| targets:81   UAAACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
HI406796.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||*|||||||| targets:94   UAAACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||*|||||||| targets:94   UAAACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||*|||||||| targets:94   UAAACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:20   AGGGGAGGUUAGGGGAAGAC   1   ||||||=||||||||||||| targets:1   UCCCCUUCAAUCCCCUUCUG   20 Target Full Sequence	1.0	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |||*||||||||||||||*|||| targets:1601   UAAACCCCUCCAAUCCCCCUCUG   1623 Target Full Sequence	1.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY104196.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |*||||=|*|||||||||||||* targets:162   UCAUCCUCACCAAUCCCCUUCUU   184 Target Full Sequence	3.0	Zea mays PCO147635 mRNA sequence	NA	coding protein	psRNATarget
NM_001152267.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |*||||=|*|||||||||||||* targets:1217   UCAUCCUCACCAAUCCCCUUCUU   1239 Target Full Sequence	3.0	Zea mays hydroxyproline-rich glycoprotein family protein (pco147635a), mRNA	NA	coding protein	psRNATarget
BT053886.1	ncRNA:23   AUUAGGGGAGGUUAGGGGAAGAC   1   |*||||=|*|||||||||||||* targets:1217   UCAUCCUCACCAAUCCCCUUCUU   1239 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0012K16 mRNA, complete cds	NA	coding protein	psRNATarget