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BaseInfo

ncRNA ID	novel_zma_miR3972
Species	Zea mays
Class	miRNA
Genome position	Chr1:143647444-143647567 [+]
Reference genome	RefGen_v4
Source	SRR2287159;SRR4237220
Length	24
Mature sequence(if miRNA)	101 - GUUCCGGAAGAAACGAACGGCCCC - 124
Stem-loop(if miRNA)	--C           -G   A      -AAC  -     C    -C     -AUCAAAA   AUAU    GUUGUUCGUUU  UCC GGAAUG    CA GGAAU AUUC  AGCCG        CUU    A    |||||||||||  ||| ||||||    || ||||| ||||  |||||        |||    CGGCAAGCAAA  AGG CCUUGC    GU CUUUG UAAG  UCGGC        GAG    A CCC           GA   -      CUCC  A     U    UA     CAAACAAA   AUUA
Stem-loop sequence	CGUUGUUCGUUUGUCCAGGAAUGAACCAGGAAUCAUUCCAGCCGAUCAAAACUUAUAUAAAUUAGAGAAACAAACCGGCUAUGAAUUGUUUCAUGCCUCCGUUCCGGAAGAAACGAACGGCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001143357.1	ncRNA:24   CCCCGGCAAGCAAAGAAGGCCUUG   1   |||||*|||||||||||||||||| targets:1242   GGGGCAGUUCGUUUCUUCCGGAAC   1265 Target Full Sequence	1.0	Zea mays Vacuolar protein sorting-associated protein 22 homolog 1 (cl9441_1b), mRNA	NA	coding protein	psRNATarget
BT037714.1	ncRNA:24   CCCCGGCAAGCAAAGAAGGCCUUG   1   |||||*|||||||||||||||||| targets:1242   GGGGCAGUUCGUUUCUUCCGGAAC   1265 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0189L11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669730.2	ncRNA:24   CCCCGGCAAGCAAAGAAGGCCUUG   1   *||*|||||||*|||||||||||| targets:1200   CGGCCCGUUCGGUUCUUCCGGAAC   1223 Target Full Sequence	1.5	PREDICTED: Zea mays integral membrane protein like (LOC100282154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ109252.1	ncRNA:24   CCCCGGCAAGCAAAGAAGGCCUUG   1   |*|*|||||||*|||||||||||= targets:72   GUGCCCGUUCGGUUCUUCCGGAAU   95 Target Full Sequence	2.5	TSA: Zea mays contig44911, mRNA sequence	NA	coding protein	psRNATarget