ncRNA ID | osa-miR810a |
Species | Oryza sativa |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UCAUAAGCCCACCACAUGUGG - NA |
Stem-loop(if miRNA) |
AAUAUUC   A      C    A     C                        AAUA                             C                             -   U        ACU UGGUUG CAUC UAAGC CACCACAUGUGGCUCGCAUGCUUA    ACUAACGGCAUAAUUAGAUCACUUGAUGA GACGUAUAUCGGUGUUCGCUAUAUAUACU AUC A        ||| |||||| |||| ||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||        UGA ACCAGC GUAG AUUCG GUGGUGUACACCGAGCGUACGAAU    UGAUUGCCGUAUUAAUUUAGUGAACUACU CUGCGUAUAGCCACAAGCGAUAUAUAUGA UGG C --UUGUU   C      A    C     A                        ----                             A                             A   U |
Stem-loop sequence | AAUAUUCACUAUGGUUGCCAUCAUAAGCCCACCACAUGUGGCUCGCAUGCUUAAAUAACUAACGGCAUAAUUAGAUCACUUGAUGACGACGUAUAUCGGUGUUCGCUAUAUAUACUAUCUACUGGUAAGUAUAUAUAGCGAACACCGAUAUGCGUCAUCAUCAAGUGAUUUAAUUAUGCCGUUAGUUAAGCAUGCGAGCCACAUGUGGUGAGCUUACGAUGACGACCACAGUUUGUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CT834298.1 |
|
1.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA003J10, full insert sequence | NA | coding protein | psRNATarget |
1 | PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"; Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH; FEBS Lett. 580:5111-5116(2006). |