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BaseInfo

ncRNA ID	novel_zma_miR3969
Species	Zea mays
Class	miRNA
Genome position	Chr1:81361912-81361977 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	23
Mature sequence(if miRNA)	44 - AAGCUGGCUGUGGAGAAAAGCUG - 66
Stem-loop(if miRNA)	GCUUUUUUCUGAAG         GAAA        GUG               AGCUUUUCU    AGCUAGCU   G               |||||||||    ||||||||   A               UCGAAAAGA    UCGGUCGA   G -------------G         GGUG        AGG
Stem-loop sequence	GCUUUUUUCUGAAGAGCUUUUCUGAAAAGCUAGCUGUGGAGGGAAGCUGGCUGUGGAGAAAAGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019048.1	ncRNA:23   GUCGAAAAGAGGUGUCGGUCGAA   1   |||||||||*||||||||||||| targets:125   CAGCUUUUCCCCACAGCCAGCUU   147 Target Full Sequence	1.0	Zea mays clone Contig569.F mRNA sequence	NA	coding protein	psRNATarget
XM_008667434.2	ncRNA:23   GUCGAAAAGAGGUGUCGGUCGAA   1   |||||||||*||||||||||||| targets:2398   CAGCUUUUCCCCACAGCCAGCUU   2420 Target Full Sequence	1.0	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103644234), mRNA	NA	coding protein	psRNATarget
XM_020545921.1	ncRNA:23   GUCGAAAAGAGGUGUCGGUCGAA   1   |||||||||*||||||||||||| targets:2219   CAGCUUUUCCCCACAGCCAGCUU   2241 Target Full Sequence	1.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC109943094), mRNA	NA	coding protein	psRNATarget
EZ078358.1	ncRNA:23   GUCGAAAAGAGGUGUCGGUCGAA   1   ||*|||*|||||||||||||||| targets:102   CAACUUAUCUCCACAGCCAGCUU   124 Target Full Sequence	1.0	TSA: Zea mays contig13997, mRNA sequence	NA	coding protein	psRNATarget
XM_008658633.1	ncRNA:20   GAAAAGAGG-UGUCGGUCGAA   1   |||||||||-||||||||||| targets:1   CUUUUCUCCCACAGCCAGCUU   21 Target Full Sequence	3.0	PREDICTED: Zea mays protein CLT1, chloroplastic (LOC103636274), mRNA	NA	coding protein	psRNATarget