ncRNA ID | osa-miR5794 |
Species | Oryza sativa |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UGAGGAAUCACUAGUAGUCGU - NA |
Stem-loop(if miRNA) |
C G CAA U C C U - U A UACU GCAUACACACAACCAUAGAGUUCAUCUUCAGAACCAAAUCCACGUUCUUGAAAAUAUGAGGAGGGUGCUGCUGGAAGAACAACAAUCGCUCAUCGUGAUGGCUGCCCACCAUGGUGACCGUAGAAACUAGCAUAG CAU GAUAU GCUG GACUGUU G GAUUCC CA GAAAUCCA AAUAUGGAAA CAA AGGCUUGAAGUAGA GUUG A ||| ||||| |||| ||||||| | |||||| || |||||||| |||||||||| ||| |||||||||||||| |||| A GUA CUAUA CGAC CUGAUGA C CUAAGG GU CUUUAGGU UUAUAUCUUU GUU UUCGAACUUCAUCU UUCA A C G UUG U A A C C U A --CG GGACCCAAAGUAGCCACUCGGAAACAAAGACAGAUAGUACCGACGGUGGUUUCACUGGUAUCUUUGAUUUUAUCUUUUCCAUCAAUGAACAGAUAGGGUUGCAUUUACUUGUUUCAGUGAACUCUAUAGAUGAAA |
Stem-loop sequence | CAUCGAUAUGGCUGCAAGACUGUUUGCGAUUCCCCAUGAAAUCCAAAUAUGGAAAUCAAAAGGCUUGAAGUAGAUACUGUUGGCAUACACACAACCAUAGAGUUCAUCUUCAGAACCAAAUCCACGUUCUUGAAAAUAUGAGGAGGGUGCUGCUGGAAGAACAACAAUCGCUCAUCGUGAUGGCUGCCCACCAUGGUGACCGUAGAAACUAGCAUAGAAAAAAGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGGAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUUUGGUGGCAGCCAUGAUAGACAGAAACAAAGGCUCACCGAUGAAACCCAGGACUUGCUCUACUUCAAGCUUAUUGUUUUCUAUAUUCUGGAUUUCCUGAGGAAUCACUAGUAGUCGUUCAGCGAUAUCCAUG |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |