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BaseInfo

ncRNA ID osa-miR5794
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UGAGGAAUCACUAGUAGUCGU - NA
Stem-loop(if miRNA)    C     G    CAA       U C      C  U        -          U   A              UACU    GCAUACACACAACCAUAGAGUUCAUCUUCAGAACCAAAUCCACGUUCUUGAAAAUAUGAGGAGGGUGCUGCUGGAAGAACAACAAUCGCUCAUCGUGAUGGCUGCCCACCAUGGUGACCGUAGAAACUAGCAUAG
CAU GAUAU GCUG   GACUGUU G GAUUCC CA GAAAUCCA AAUAUGGAAA CAA AGGCUUGAAGUAGA    GUUG                                                                                                                                       A
||| ||||| ||||   ||||||| | |||||| || |||||||| |||||||||| ||| ||||||||||||||    ||||                                                                                                                                       A
GUA CUAUA CGAC   CUGAUGA C CUAAGG GU CUUUAGGU UUAUAUCUUU GUU UUCGAACUUCAUCU    UUCA                                                                                                                                       A
   C     G    UUG       U A      A  C        C          U   A              --CG    GGACCCAAAGUAGCCACUCGGAAACAAAGACAGAUAGUACCGACGGUGGUUUCACUGGUAUCUUUGAUUUUAUCUUUUCCAUCAAUGAACAGAUAGGGUUGCAUUUACUUGUUUCAGUGAACUCUAUAGAUGAAA
Stem-loop sequence CAUCGAUAUGGCUGCAAGACUGUUUGCGAUUCCCCAUGAAAUCCAAAUAUGGAAAUCAAAAGGCUUGAAGUAGAUACUGUUGGCAUACACACAACCAUAGAGUUCAUCUUCAGAACCAAAUCCACGUUCUUGAAAAUAUGAGGAGGGUGCUGCUGGAAGAACAACAAUCGCUCAUCGUGAUGGCUGCCCACCAUGGUGACCGUAGAAACUAGCAUAGAAAAAAGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGGAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUUUGGUGGCAGCCAUGAUAGACAGAAACAAAGGCUCACCGAUGAAACCCAGGACUUGCUCUACUUCAAGCUUAUUGUUUUCUAUAUUCUGGAUUUCCUGAGGAAUCACUAGUAGUCGUUCAGCGAUAUCCAUG

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).