Search result

BaseInfo

ncRNA ID	novel_zma_miR3958
Species	Zea mays
Class	miRNA
Genome position	Chr1:108991868-108991956 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR5451003;SRR5451004;SRR2089701;SRR2089703;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AUGAUUUGUAGUGGCGGUUUUUUU - 24
Stem-loop(if miRNA)	--              G       --                CCU   GAAAACCGCCACUA AAAUCGU  AUUUCUACUGGCGGUU   U   |||||||||||||| |||||||  ||||||||||||||||   A   UUUUUGGCGGUGAU UUUAGUA  UAAAGAUGACCGCCAA   A UU              G       CC                AAG
Stem-loop sequence	GAAAACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGGCGGUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235227.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	1.5	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	1.5	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	1.5	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||||||||*||||||| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||=|||||*||||||| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||=|||||*||||||| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   ||=|||||||=|||||*||||||| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *|||=|||||||||||*||||||| targets:30   UAAAGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	1.5	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *|||=|||||||||||*||||||| targets:30   UAAAGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	1.5	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *|||=|||||||||||*||||||| targets:30   UAAAGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	1.5	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *||*||||||=||||||||||||| targets:30   UAAUAAACCGUCACUACAAAUCAU   53 Target Full Sequence	1.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *||*||||||=||||||||||||| targets:30   UAAUAAACCGUCACUACAAAUCAU   53 Target Full Sequence	1.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *||*||||||=||||||||||||| targets:30   UAAUAAACCGUCACUACAAAUCAU   53 Target Full Sequence	1.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   UUUUUUUGGCGGUGAUGUUUAGUA   1   *||=|||||*|||||||||||||| targets:614   UAAGAAACCACCACUACAAAUCAU   637 Target Full Sequence	1.0	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget