Search result

BaseInfo

ncRNA ID	novel_zma_miR3957
Species	Zea mays
Class	miRNA
Genome position	Chr1:131284548-131284629 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2287162
Length	21
Mature sequence(if miRNA)	62 - GGAGGGGAUUGAGGGGGCUAA - 82
Stem-loop(if miRNA)	--                             G        A   GGAGGGGAUUGAGGGGGCUAAAAUCCCCU UUUAUUUA U   ||||||||||||||||||||||||||||| ||||||||   CCUCCUCUAACUCCCCCGAUUUUGGGGGA AGAUAAGU U AA                             A        U
Stem-loop sequence	GGAGGGGAUUGAGGGGGCUAAAAUCCCCUGUUUAUUUAAUUUUGAAUAGAAAGGGGGUUUUAGCCCCCUCAAUCUCCUCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546477.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   ||||||||||||||||||||| targets:7   UUAGCCCCCUCAAUCCCCUCC   27 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   ||||||||=|||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCC   1132 Target Full Sequence	1.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406027.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:85   AUAGCCCCCUCAAUCCCCUUC   105 Target Full Sequence	1.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
JB166488.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:85   AUAGCCCCCUCAAUCCCCUUC   105 Target Full Sequence	1.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:85   AUAGCCCCCUCAAUCCCCUUC   105 Target Full Sequence	1.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:2621   AUAGCCCCCUCAAUCCCCUUC   2641 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:2621   AUAGCCCCCUCAAUCCCCUUC   2641 Target Full Sequence	1.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||||||||||||=| targets:2709   AUAGCCCCCUCAAUCCCCUUC   2729 Target Full Sequence	1.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||=||||||||||||||| targets:1671   CUAGCUCCCUCAAUCCCCUCC   1691 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941453.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   *||||||||*||||||||||| targets:58   CUAGCCCCCCCAAUCCCCUCC   78 Target Full Sequence	1.5	Zea mays clone 1453301 mRNA sequence	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:21   AAUC---GGGGGAGUUAGGGGAGG   1   *|||---||||||||||||||||| targets:2256   CUAGUUUCCCCCUCAAUCCCCUCC   2279 Target Full Sequence	3.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   AA-UCGGGGGAGUUAGGGGAGG   1   ||-|*||||||||||||||||| targets:3171   UUGAUCCCCCUCAAUCCCCUCC   3192 Target Full Sequence	3.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   **|*||||||||||||||||| targets:29   ACAUCCCCCUCAAUCCCCUCC   49 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   **|*||||||||||||||||| targets:29   ACAUCCCCCUCAAUCCCCUCC   49 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   **|*||||||||||||||||| targets:29   ACAUCCCCCUCAAUCCCCUCC   49 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
EU954576.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   **||||=||||*||||||||| targets:78   CCAGCCUCCUCCAUCCCCUCC   98 Target Full Sequence	2.5	Zea mays clone 1471242 pentatricopeptide repeat protein PPR986-12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672715.2	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   **||||=||||*||||||||| targets:97   CCAGCCUCCUCCAUCCCCUCC   117 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial (LOC103648228), mRNA	NA	coding protein	psRNATarget
EU942385.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   ****|||=||||||||||||| targets:69   CCCCCCCUCUCAAUCCCCUCC   89 Target Full Sequence	3.0	Zea mays clone 1490977 mRNA sequence	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   |*|*=|=|||||||||||||| targets:27   UCAUUCUCCUCAAUCCCCUCC   47 Target Full Sequence	3.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   |*|*=|=|||||||||||||| targets:27   UCAUUCUCCUCAAUCCCCUCC   47 Target Full Sequence	3.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   AAUCGGGGGAGUUAGGGGAGG   1   |*|*=|=|||||||||||||| targets:27   UCAUUCUCCUCAAUCCCCUCC   47 Target Full Sequence	3.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget