Search result

BaseInfo

ncRNA ID	novel_zma_miR3954
Species	Zea mays
Class	miRNA
Genome position	Chr1:268316635-268316805 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647391
Length	23
Mature sequence(if miRNA)	1 - UAGUCUAUUUUAGUCCCUAAAUU - 23
Stem-loop(if miRNA)	--     U            A  A  U    A       -A        UAAA         CU      ----AG   GCUCCAAAU   UUUAG GACUAAAAUGGA UA AA GGAG GACUAAA  UUAGUCCC    AACCAAACA  CCCUUA      UUG         U   ||||| |||||||||||| || || |||| |||||||  ||||||||    |||||||||  ||||||      |||   AAAUC CUGAUUUUAUCU AU UU CCUC CUGAUUU  AAUUAGGG    UUGGUUUGU  GGGAAU      AUG         U UU     C            G  A  C    C       CA        UACC         UG      GUGUAU   AACCCACGU
Stem-loop sequence	UUUAGUGACUAAAAUGGAAUAAAAUGGAGAGACUAAAAUUAGUCCCUAAAAACCAAACACUCCCUUAAGUUGGCUCCAAAUUUUGCACCCAAGUAUAUGUGUAAGGGGUUGUUUGGUUCCAUGGGAUUAAACUUUAGUCCCUCCCUUAUAGUCUAUUUUAGUCCCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067716.1	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||*|||||||||||||||| targets:1518   AAUUUAUGGACUAAAAUAGACUA   1540 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0138J16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176237.1	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||*|||||||||||||||| targets:1518   AAUUUAUGGACUAAAAUAGACUA   1540 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383589 (LOC100383589), mRNA	NA	coding protein	psRNATarget
BT066057.2	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||||||||||||*|||||| targets:900   AAUUUAGGGACUAAAACAGACUA   922 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds	NA	coding protein	psRNATarget
HI402994.1	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||||||||||||||||*|| targets:110   AAUUUAGGGACUAAAAUAGAAUA   132 Target Full Sequence	1.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||||||||||||||||*|| targets:110   AAUUUAGGGACUAAAAUAGAAUA   132 Target Full Sequence	1.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:23   UUAAAUCCCUGAUUUUAUCUGAU   1   ||||||||||||||||||||*|| targets:110   AAUUUAGGGACUAAAAUAGAAUA   132 Target Full Sequence	1.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget