ncRNA ID | novel_zma_miR3953 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:183727091-183727220 [-] |
Reference genome | RefGen_v4 |
Source | SRR2287159 |
Length | 22 |
Mature sequence(if miRNA) | 109 - AUAGCCAUGAACGACCAUUUUA - 130 |
Stem-loop(if miRNA) |
--AUAG                 A    A  GA   A    U   ---       C   G   CAA       CCAUGAACGACCAUUUU AAUA UA  GAA GCUA UAU   UGGAUUU UGG GGA   C       ||||||||||||||||| |||| ||  ||| |||| |||   ||||||| ||| |||   A       GGUACUUGCUGGUAAAA UUAU AU  CUU CGAU GUG   GCCUAAA ACU CUU   U UUUAUA                 G    A  GG   C    U   GAU       A   G   CUU |
Stem-loop sequence | AUAGCCAUGAACGACCAUUUUAAAUAAUAGAGAAAGCUAUUAUUGGAUUUCUGGGGGACAACAUUUCUUCGUCAAAAAUCCGUAGGUGUUAGCCUUCGGUAAUAUUGAAAAUGGUCGUUCAUGGAUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ094456.1 |
|
0.0 | TSA: Zea mays contig30108, mRNA sequence | NA | coding protein | psRNATarget |