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BaseInfo

ncRNA ID novel_zma_miR3953
Species Zea mays
Class miRNA
Genome position Chr1:183727091-183727220 [-]
Reference genome RefGen_v4
Source SRR2287159
Length 22
Mature sequence(if miRNA) 109 - AUAGCCAUGAACGACCAUUUUA - 130
Stem-loop(if miRNA) --AUAG                 A    A  GA   A    U   ---       C   G   CAA
      CCAUGAACGACCAUUUU AAUA UA  GAA GCUA UAU   UGGAUUU UGG GGA   C
      ||||||||||||||||| |||| ||  ||| |||| |||   ||||||| ||| |||   A
      GGUACUUGCUGGUAAAA UUAU AU  CUU CGAU GUG   GCCUAAA ACU CUU   U
UUUAUA                 G    A  GG   C    U   GAU       A   G   CUU
Stem-loop sequence AUAGCCAUGAACGACCAUUUUAAAUAAUAGAGAAAGCUAUUAUUGGAUUUCUGGGGGACAACAUUUCUUCGUCAAAAAUCCGUAGGUGUUAGCCUUCGGUAAUAUUGAAAAUGGUCGUUCAUGGAUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ094456.1
ncRNA:22   AUUUUACCAGCAAGUACCGAUA   1
  *|||||||||||||||||||||
targets:17   GAAAAUGGUCGUUCAUGGCUAU   38

0.0 TSA: Zea mays contig30108, mRNA sequence NA coding protein psRNATarget