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BaseInfo

ncRNA ID novel_zma_miR3948
Species Zea mays
Class miRNA
Genome position Chr1:216165674-216165743 [-]
Reference genome RefGen_v4
Source SRR2287159;SRR2287162
Length 24
Mature sequence(if miRNA) 47 - GUAUUGGAUGGGAUUGAGCCGGUU - 70
Stem-loop(if miRNA) --       A          -CC     A    CA
  GUAUUGG UGGGAUUGAG   GGUUU AAUU  U
  ||||||| ||||||||||   ||||| ||||  A
  CAUAACC ACCUUAACUC   UUAAA UUGA  A
CA       C          CAC     A    AC
Stem-loop sequence GUAUUGGAUGGGAUUGAGCCGGUUUAAAUUCAUAACAAGUUAAAAUUCACCUCAAUUCCACCCAAUACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660051.2
ncRNA:24   UUG-GCCGAGUUAGGGUAGGUUAUG   1
  ||=-|**||||||||||||||||||
targets:1579   AAUACAUCUCAAUCCCAUCCAAUAC   1603

1.0 PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA NA coding protein psRNATarget