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BaseInfo

ncRNA ID	novel_zma_miR3947
Species	Zea mays
Class	miRNA
Genome position	Chr1:220965369-220965428 [-]
Reference genome	RefGen_v4
Source	SRR2287159;SRR2089706
Length	24
Mature sequence(if miRNA)	37 - GUGUCAGGCUGUGGGUUAAACGGG - 60
Stem-loop(if miRNA)	--     AG C       ---       -  A   GUGUC  G UGUGGGU   UAAACGG GC G   |||||  | |||||||   ||||||| || C   CACGG  C AUAUCUA   GUUUGUC CG C AA     CU -       CAG       A  C
Stem-loop sequence	GUGUCAGGCUGUGGGUUAAACGGGCAGCCCGCACUGUUUGGACAUCUAUACUCGGCACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061394.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:933   GGAGUUCAACCCACAGCGUGACAC   956 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0142C01 mRNA, complete cds	NA	coding protein	psRNATarget
BT040489.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1023   GGAGUUCAACCCACAGCGUGACAC   1046 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0096K12 mRNA, complete cds	NA	coding protein	psRNATarget
BT039246.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1030   GGAGUUCAACCCACAGCGUGACAC   1053 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147174.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1030   GGAGUUCAACCCACAGCGUGACAC   1053 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272721 (pco068984(32)), mRNA	NA	coding protein	psRNATarget
BT087608.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1157   GGAGUUCAACCCACAGCGUGACAC   1180 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0129I16 mRNA, complete cds	NA	coding protein	psRNATarget
EU962746.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1187   GGAGUUCAACCCACAGCGUGACAC   1210 Target Full Sequence	2.5	Zea mays clone 245158 mRNA sequence	NA	coding protein	psRNATarget
AY106166.1	ncRNA:24   GGGCAAAUUGGGUGUCGGACUGUG   1   ***|||*||||||||||*|||||| targets:1249   GGAGUUCAACCCACAGCGUGACAC   1272 Target Full Sequence	2.5	Zea mays PCO068984 mRNA sequence	NA	coding protein	psRNATarget