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BaseInfo

ncRNA ID novel_zma_miR3944
Species Zea mays
Class miRNA
Genome position Chr1:225027518-225027689 [-]
Reference genome RefGen_v4
Source SRR2287159;SRR1618882;SRR2287163;SRR1618883;SRR3341856;SRR5099742;SRR5100248;SRR5100255;SRR5105961;SRR5105963
Length 23
Mature sequence(if miRNA) 1 - CAUGCUAACACUGAACAUUUUAG - 23
Stem-loop(if miRNA) --AGGAA       -UC      ----U   -UUCU      -     GC  G GGAUCUACACCAUCAAAUUUCGACUGUGACUAUGCUU
       GUUCAGU   AGUAUG     CAU     UUGGAU AUCAG  UC A                                     A
       |||||||   ||||||     |||     |||||| |||||  || |
       CAAGUCA   UCGUAC     GUA     AGCCUA UAGUC  UU G                                     U
GAUUUUA       CAA      UUAUU   UUCCU      G     --  - UAAGUCAAAAGGUUUUAGAGUCACUUUAUCAUGAGUG
Stem-loop sequence AGGAAGUUCAGUUCAGUAUGUCAUUUCUUUGGAUAUCAGGCUCGAGGAUCUACACCAUCAAAUUUCGACUGUGACUAUGCUUAUGUGAGUACUAUUUCACUGAGAUUUUGGAAAACUGAAUGUUCUGAUGAUCCGAUCCUUAUGUUAUUCAUGCUAACACUGAACAUUUUAG