Search result

BaseInfo

ncRNA ID novel_zma_miR3939
Species Zea mays
Class miRNA
Genome position Chr1:273174981-273175046 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AAUCUGGGGGUAAACAAACAGACC - 24
Stem-loop(if miRNA) --A                UA       U    C
   CUGUUUGUUUGCCUCU  GGAUUAU UAAU C
   ||||||||||||||||  ||||||| ||||
   GACAAACAAAUGGGGG  UCUAAUA AUUA A
CCA                --       U    G
Stem-loop sequence ACUGUUUGUUUGCCUCUUAGGAUUAUUUAAUCCAGAUUAUAUAAUCUGGGGGUAAACAAACAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085555.1
ncRNA:24   CCAGACAAACAAAUGGGGGUCUAA   1
  ||*|||||||||||||||||||||
targets:1674   GGCCUGUUUGUUUACCCCCAGAUU   1697

0.0 Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds NA coding protein psRNATarget
XM_008664497.2
ncRNA:24   CCAGACAAACAAAUGGGGGUCUAA   1
  |||||*|||||||||||||=||||
targets:1433   GGUCUCUUUGUUUACCCCCGGAUU   1456

2.5 PREDICTED: Zea mays F-box protein SKIP19 (LOC103641127), mRNA NA coding protein psRNATarget