Search result

BaseInfo

ncRNA ID	novel_zma_miR3936
Species	Zea mays
Class	miRNA
Genome position	Chr10:134555766-134555820 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647388;SRR2089705
Length	24
Mature sequence(if miRNA)	32 - AAGCUGCUACGGACUGCCAAACGC - 55
Stem-loop(if miRNA)	--    C   -U    --              GUUU GGC  UCUG  GCAGCUUUUGGC   |||| |||  ||||  |||||||||||C   CAAA CCG  AGGC  CGUCGAAAACCA CG    -   UC    AU
Stem-loop sequence	GUUUCGGCUUCUGGCAGCUUUUGGCCACCAAAAGCUGCUACGGACUGCCAAACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ111561.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||||||||||*|||||||| targets:147   GCGUUUGGCAGUCCGCAGCAGCUU   170 Target Full Sequence	1.5	TSA: Zea mays contig47222, mRNA sequence	NA	coding protein	psRNATarget
EZ054166.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||||||||||*|||||||| targets:268   GCGUUUGGCAGUCCGCAGCAGCUU   291 Target Full Sequence	1.5	TSA: Zea mays contig55288, mRNA sequence	NA	coding protein	psRNATarget
EU947367.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||||||||||*|||||||| targets:244   GCGUUUGGCAGUCCGCAGCAGCUU   267 Target Full Sequence	1.5	Zea mays clone 341166 mRNA sequence	NA	coding protein	psRNATarget
XM_008657517.2	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||||||||||*|||||||| targets:2538   GCGUUUGGCAGUCCGCAGCAGCUU   2561 Target Full Sequence	1.5	PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061642.2	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   *=|||||||||||||*|||||||| targets:1850   AUGUUUGGCAGUCCGCAGCAGCUU   1873 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT019104.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||*|||||||*|||||||| targets:757   GCGUUUGACAGUCCGCAGCAGCUU   780 Target Full Sequence	2.5	Zea mays clone Contig706.F mRNA sequence	NA	coding protein	psRNATarget
BT018867.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   |||||||*|||||||*|||||||| targets:1582   GCGUUUGACAGUCCGCAGCAGCUU   1605 Target Full Sequence	2.5	Zea mays clone EL01N0561F02.d mRNA sequence	NA	coding protein	psRNATarget
EU951194.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   *=|||||*|||||||*|||||||| targets:297   AUGUUUGACAGUCCGCAGCAGCUU   320 Target Full Sequence	2.5	Zea mays clone 689005 mRNA sequence	NA	coding protein	psRNATarget
NM_001148703.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   *=|||||*|||||||*|||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays General transcription factor IIH subunit 2 (LOC100274342), mRNA	NA	coding protein	psRNATarget
BT042815.1	ncRNA:24   CGCAAACCGUCAGGCAUCGUCGAA   1   *=|||||*|||||||*|||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0045N18 mRNA, complete cds	NA	coding protein	psRNATarget