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BaseInfo

ncRNA ID	novel_zma_miR3935
Species	Zea mays
Class	miRNA
Genome position	Chr1:291562446-291562494 [+]
Reference genome	RefGen_v4
Source	SRR2287159
Length	24
Mature sequence(if miRNA)	1 - UUUGCAUAAGGUUAGUCGUUCGAA - 24
Stem-loop(if miRNA)	--                CG   G   UUUGCAUAAGGUUAGU  UUC A   ||||||||||||||||  ||| A   AGACGUAUUCCAAUCA  AAG U UA                AA   U
Stem-loop sequence	UUUGCAUAAGGUUAGUCGUUCGAAUUGAAAAACUAACCUUAUGCAGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163444.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:33   UUCGAACGACUAACCUUAGGCAAA   56 Target Full Sequence	1.5	Sequence 1108 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235113.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:33   UUCGAACGACUAACCUUAGGCAAA   56 Target Full Sequence	1.5	Sequence 1108 from Patent EP2985353	NA	coding protein	psRNATarget
HI402983.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:33   UUCGAACGACUAACCUUAGGCAAA   56 Target Full Sequence	1.5	Sequence 1108 from Patent EP2074227	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:180   UUCGAACGACUAACCUUAGGCAAA   203 Target Full Sequence	1.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:180   UUCGAACGACUAACCUUAGGCAAA   203 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:1033   UUCGAACGACUAACCUUAGGCAAA   1056 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:908   UUCGAACGACUAACCUUACGCAAA   931 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:1375   UUCGAACGACUAACCUUAGGCAAA   1398 Target Full Sequence	1.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:1392   UUCGAACGACUAACCUUACGCAAA   1415 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:1550   UUCGAACGACUAACCUUAGGCAAA   1573 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:852   UUCGAACGACUAACCUUAGGCAAA   875 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:763   UUCGAACGACUAACCUUAGGCAAA   786 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:763   UUCGAACGACUAACCUUAGGCAAA   786 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:763   UUCGAACGACUAACCUUAGGCAAA   786 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:2630   UUCGAACGACUAACCUUAGGCAAA   2653 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:2728   UUCGAACGACUAACCUUAGGCAAA   2751 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:3192   UUCGAACGACUAACCUUAGGCAAA   3215 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:3320   UUCGAACGACUAACCUUAGGCAAA   3343 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||||||||||||||*||||| targets:3327   UUCGAACGACUAACCUUAGGCAAA   3350 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EZ060318.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||=|||||||||||||*||||| targets:207   UUCGGACGACUAACCUUAGGCAAA   230 Target Full Sequence	1.5	TSA: Zea mays contig61440, mRNA sequence	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   |||||||||=||||||||*||||| targets:960   UUCGAACGAUUAACCUUAGGCAAA   983 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   *|||||||||||||||||*||||| targets:72   CUCGAACGACUAACCUUAGGCAAA   95 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   *|||||||||||||||||*||||| targets:72   CUCGAACGACUAACCUUAGGCAAA   95 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   *|||||||||||||||||*||||| targets:72   CUCGAACGACUAACCUUAGGCAAA   95 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||||*|||||||||||*||||| targets:1537   UUCGAAGGACUAACCUUAGGCAAA   1560 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||||=||*||||||||||*||||| targets:388   UUCGGACAACUAACCUUAGGCAAA   411 Target Full Sequence	2.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AAGCUUGCUGAUUGGAAUACGUUU   1   ||=*||||||||||||||*||||| targets:2456   UUUAAACGACUAACCUUAGGCAAA   2479 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget