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BaseInfo

ncRNA ID novel_zma_miR3933
Species Zea mays
Class miRNA
Genome position Chr1:272900671-272900727 [+]
Reference genome RefGen_v4
Source SRR2287159
Length 20
Mature sequence(if miRNA) 1 - CUCCAGUGCAGGCGAGAGCG - 20
Stem-loop(if miRNA) --  -   G   -A            G  A
  CU CCA UGC  GGCGAGAGCGGG CG U
  || ||| |||  |||||||||||| ||
  GA GGU GCG  CCGCUCUCGCCC GC A
AC  C   G   GG            -  U
Stem-loop sequence CUCCAGUGCAGGCGAGAGCGGGGCGAUAUCGCCCGCUCUCGCCGGGCGGUGGCAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405924.1
ncRNA:20   GCGAGAGCGGACGUGACCUC   1
  ||||||||||||||||||||
targets:120   CGCUCUCGCCUGCACUGGAG   139

0.0 Sequence 4049 from Patent EP2074227 NA coding protein psRNATarget
LQ238054.1
ncRNA:20   GCGAGAGCGGACGUGACCUC   1
  ||||||||||||||||||||
targets:120   CGCUCUCGCCUGCACUGGAG   139

0.0 Sequence 4049 from Patent EP2985353 NA coding protein psRNATarget
JB166385.1
ncRNA:20   GCGAGAGCGGACGUGACCUC   1
  ||||||||||||||||||||
targets:120   CGCUCUCGCCUGCACUGGAG   139

0.0 Sequence 4049 from Patent EP2559767 NA coding protein psRNATarget