| ncRNA ID | osa-miR444d.3 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | NA |
| Reference genome | NA |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | NA - UUGUGGCUUUCUUGCAAGUUG - NA |
| Stem-loop(if miRNA) |
AGUUAUU CAU U C A A U G -- GCA GG GGCA CAAGC UGAGGCA CAACUGCAU ACUUGCAAGAAAG CACAA AAUCAUU ||| || |||| ||||| ||||||| ||||||||| ||||||||||||| ||||| ||||||A CGU CC CCGU GUUCG ACUCCGU GUUGACGUG UGAACGUUCUUUC GUGUU UUAGUAG --UAAAC CUC U C A C U G CA |
| Stem-loop sequence | AGUUAUUGCACAUGGUGGCACCAAGCAUGAGGCAACAACUGCAUUACUUGCAAGAAAGGCACAAAAUCAUUAGAUGAUUACUUGUGGCUUUCUUGCAAGUUGUGCAGUUGCUGCCUCAAGCUUGCUGCCUCCCUCUGCCAAAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY224482.1 |
|
0.0 | Oryza sativa (japonica cultivar-group) isolate 29949 MADS box protein-like protein mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY177702.1 |
|
0.0 | Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| CT835372.1 |
|
0.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK241644.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J065189M04, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015771309.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X2, mRNA | MADS-box transcription factor 57(LOC4330621) | coding protein | psRNATarget | |||||||||
| XM_015771308.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 57 (LOC4330621), transcript variant X1, mRNA | MADS-box transcription factor 57(LOC4330621) | coding protein | psRNATarget |
| 1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
| 2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |
| 3 | PMID:18323537
"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"; Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ; Genome Res. 18:571-584(2008). |